Taxonomy heatmap of the predicted lectin classes

Taxonomy heatmap of the predicted lectin classes Taxonomy heatmap of the predicted lectin classes

Each species with at least one identified lectin possesses its own set of lectin(s) called lectome. The present interface allows to explore the lectome in function of the taxonomy.

E.g. the lectome of Streptomyces can be explored by setting the superkingdom to Bacteria and the genus to Streptomyces.

Search criteria

Displayed taxonomic level

Minimum score

Minimum lectin classes

Lectin class

Keyword to exclude (word1;word2)

Lectin class to exclude (word1;word2)

Pathogen species

UniRef cluster representative

Superkingdom (Required)

Kingdom (Metazoa;Fungi;Viridiplantae)

Phylum (Actinobacteria;Bacteroidetes;Firmicutes;Proteobacteria)

Class

Family

Genus

Species

Subspecies

How to cite: François Bonnardel, Julien Mariethoz, Serge Pérez, Anne Imberty, Frédérique Lisacek, LectomeXplore, an update of UniLectin for the discovery of carbohydrate-binding proteins based on a new lectin classification, Nucleic Acids Research doi.org/10.1093/nar/gkaa1019