5VX5 structure in UniLectin3D

Mol* PDB structure viewer

Select a PDB entry:

Fold

Class

Family

Resolution (Å)

Origin

Species

Comments

VP8* of a G2P[4] Human Rotavirus in complex with LNFP1

Hu L, Sankaran B, Laucirica D, Patil K, Salmen W, Ferreon A, Tsoi P, Lasanajak Y, Smith D, Ramani S, Atmar R, Estes M, Ferreon J, Prasad B. Glycan recognition in globally dominant human rotaviruses. Nature communications 2018

Matching protein

Q2VE61 in UniLectin

Available structures

5VX4 : no ligand
5VX5 : aFuc12bGal13bGlcNAc13bGal14Glc

Related proteins
> 50% identity

Ligand

Glycan composition

IUPAC condensed

GlycoCT

RES
1b:x-dglc-HEX-1:5
2b:b-dgal-HEX-1:5
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dgal-HEX-1:5
6b:a-lgal-HEX-1:5|6:d
LIN
1:1o(4+1)2d
2:2o(3+1)3d
3:3d(2+1)4n
4:3o(3+1)5d
5:5o(2+1)6d

PubMed DOI RCSB.ORG PDBeGlyTouCan (glycan information)SwissModel (ligand interactions)Glyconnect and SugarBind glycan superstructure(s)Uniprot

Pictures

SWISS MODEL PLIP INTERACTIONS VIEWER

PDBe SEQ viewer

PDBe Topology viewer

How to cite

How to cite: