Protein
Protein (NP_065137)
Endosialin
Endosialin (Tumor endothelial marker 1) (CD antigen CD248)
CD248
CD248 molecule
Low evidence
C-type lectin
Undefined
C-type - Endosialin
a/b mixed / C-type lectin-like
Lipopolysaccharide
0.257
MLLRLLLAWAAAGPTLGQDPWAAEPRAACGPSSCYALFPRRRTFLEAWRACRELGGDLATPRTPEEAQRVDSLVGAGPASRLLWIGLQRQARQCQLQRPLRGFTWTTGDQDTAFTNWAQPASGGPCPAQRCVALEASGEHRWLEGSCTLAVDGYLCQFGFEGACPALQDEAGQAGPAVYTTPFHLVSTEFEWLPFGSVAAVQCQAGRGASLLCVKQPEGGVGWSRAGPLCLGTGCSPDNGGCEHECVEEVDGHVSCRCTEGFRLAADGRSCEDPCAQAPCEQQCEPGGPQGYSCHCRLGFRPAEDDPHRCVDTDECQIAGVCQQMCVNYVGGFECYCSEGHELEADGISCSPAGAMGAQASQDLGDELLDDGEDEEDEDEAWKAFNGGWTEMPGILWMEPTQPPDFALAYRPSFPEDREPQIPYPEPTWPPPLSAPRVPYHSSVLSVTRPVVVSATHPTLPSAHQPPVIPATHPALSRDHQIPVIAANYPDLPSAYQPGILSVSHSAQPPAHQPPMISTKYPELFPAHQSPMFPDTRVAGTQTTTHLPGIPPNHAPLVTTLGAQLPPQAPDALVLRTQATQLPIIPTAQPSLTTTSRSPVSPAHQISVPAATQPAALPTLLPSQSPTNQTSPISPTHPHSKAPQIPREDGPSPKLALWLPSPAPTAAPTALGEAGLAEHSQRDDRWLLVALLVPTCVFLVVLLALGIVYCTRCGPHAPNKRITDCYRWVIHAGSKSPTEPMPPRGSLTGVQTCRTSV
No structure currently available in the PDB RCSB Databank.
Structural models
SWISS-MODEL structural models
The location of the lectin domain structural model is: 30-159
We infer [1.59, 2.07] Å as the interval of error of this structural model.
Template 1: 3L9J chain: C, P05452, NP_003269.2, sequence identity: 25.4%, coverage: 92.3%, location in sequence: 67-201, (46-180 in PDB).
Template 2: 4MTH chain: A, Q06141, NP_002571.1, sequence identity: 24.6%, coverage: 96.9%, location in sequence: 40-175, (40-175 in PDB).
Template 3: 3WH3 chain: A, Q9ULY5, NP_055173.1, sequence identity: 20.8%, coverage: 91.5%, location in sequence: 79-208, (79-208 in PDB).
Show the alignment used for the construction of the structural model, Download.
Show the plot of DOPE energy score, Download.
We infer [1.59, 2.07] Å as the interval of error of this structural model.
Template 1: 3L9J chain: C, P05452, NP_003269.2, sequence identity: 25.4%, coverage: 92.3%, location in sequence: 67-201, (46-180 in PDB).
Template 2: 4MTH chain: A, Q06141, NP_002571.1, sequence identity: 24.6%, coverage: 96.9%, location in sequence: 40-175, (40-175 in PDB).
Template 3: 3WH3 chain: A, Q9ULY5, NP_055173.1, sequence identity: 20.8%, coverage: 91.5%, location in sequence: 79-208, (79-208 in PDB).
Show the alignment used for the construction of the structural model, Download.
Show the plot of DOPE energy score, Download.
Ligand
Glycan ligands from structural data
No crystal structures of complexes with glycan ligand.
References
NCBI References (10 PubMed Identifiers)
- Role of tumor endothelial marker 1 (Endosialin/CD248) lectin-like domain in lipopolysaccharide-induced macrophage activation and sepsis in mice. [33737161]
- Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains. [32814053]
- Modified TLR-mediated downregulation of miR-125b-5p enhances CD248 (endosialin)-induced metastasis and drug resistance in colorectal cancer cells. [31746054]
- Linking myofibroblast generation and microvascular alteration: The role of CD248 from pathogenesis to therapeutic target (Review). [31257535]
- Specific loss of adipocyte CD248 improves metabolic health via reduced white adipose tissue hypoxia, fibrosis and inflammation. [31221584]
- Human endosialin (tumor endothelial marker 1) is abundantly expressed in highly malignant and invasive brain tumors. [15624764]
- Molecular characterization of the mouse Tem1/endosialin gene regulated by cell density in vitro and expressed in normal tissues in vivo. [11489895]
- Molecular cloning and characterization of endosialin, a C-type lectin-like cell surface receptor of tumor endothelium. [11084048]
- Genes expressed in human tumor endothelium. [10947988]
- Identification of endosialin, a cell surface glycoprotein of vascular endothelial cells in human cancer. [1438285]
UniProt Main References (6 PubMed Identifiers)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. [14702039]
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). [15489334]
- Characterization of cancer stroma markers: in silico analysis of an mRNA expression database for fibroblast activation protein and endosialin. [16076089]
- Endosialin (TEM1, CD248) is a marker of stromal fibroblasts and is not selectively expressed on tumour endothelium. [15862292]
- An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. [24275569]
- The consensus coding sequences of human breast and colorectal cancers. [16959974]
RNA
RNA (Transcript ID: NM_020404.3)
m7G-5')ppp(5'-AGUCCGGGGGCAUCGCGAUGCUGCUGCGCCUGUUGCUGGCCUGGGCGGCCGCAGGGCCCACACUGGGCCAGGACCCCUGGGCUGCUGAGCCCCGUGCCGCCUGCGGCCCCAGCAGCUGCUACGCUCUCUUCCCACGGCGCCGCACCUUCCUGGAGGCCUGGCGGGCCUGCCGCGAGCUGGGGGGCGACCUGGCCACUCCUCGGACCCCCGAGGAGGCCCAGCGUGUGGACAGCCUGGUGGGUGCGGGCCCAGCCAGCCGGCUGCUGUGGAUCGGGCUGCAGCGGCAGGCCCGGCAAUGCCAGCUGCAGCGCCCACUGCGCGGCUUCACGUGGACCACAGGGGACCAGGACACGGCUUUCACCAACUGGGCCCAGCCAGCCUCUGGAGGCCCCUGCCCGGCCCAGCGCUGUGUGGCCCUGGAGGCAAGUGGCGAGCACCGCUGGCUGGAGGGCUCGUGCACGCUGGCUGUCGACGGCUACCUGUGCCAGUUUGGCUUCGAGGGCGCCUGCCCGGCGCUGCAAGAUGAGGCGGGCCAGGCCGGCCCAGCCGUGUAUACCACGCCCUUCCACCUGGUCUCCACAGAGUUUGAGUGGCUGCCCUUCGGCUCUGUGGCCGCUGUGCAGUGCCAGGCUGGCAGGGGAGCCUCUCUGCUCUGCGUGAAGCAGCCUGAGGGAGGUGUGGGCUGGUCACGGGCUGGGCCCCUGUGCCUGGGGACUGGCUGCAGCCCUGACAACGGGGGCUGCGAACACGAAUGUGUGGAGGAGGUGGAUGGUCACGUGUCCUGCCGCUGCACUGAGGGCUUCCGGCUGGCAGCAGACGGGCGCAGUUGCGAGGACCCCUGUGCCCAGGCUCCGUGCGAGCAGCAGUGUGAGCCCGGUGGGCCACAAGGCUACAGCUGCCACUGUCGCCUGGGUUUCCGGCCAGCGGAGGAUGAUCCGCACCGCUGUGUGGACACAGAUGAGUGCCAGAUUGCCGGUGUGUGCCAGCAGAUGUGUGUCAACUACGUUGGUGGCUUCGAGUGUUAUUGUAGCGAGGGACAUGAGCUGGAGGCUGAUGGCAUCAGCUGCAGCCCUGCAGGGGCCAUGGGUGCCCAGGCUUCCCAGGACCUCGGAGAUGAGUUGCUGGAUGACGGGGAGGAUGAGGAAGAUGAAGACGAGGCCUGGAAGGCCUUCAACGGUGGCUGGACGGAGAUGCCUGGGAUCCUGUGGAUGGAGCCUACGCAGCCGCCUGACUUUGCCCUGGCCUAUAGACCGAGCUUCCCAGAGGACAGAGAGCCACAGAUACCCUACCCGGAGCCCACCUGGCCACCCCCGCUCAGUGCCCCCAGGGUCCCCUACCACUCCUCAGUGCUCUCCGUCACCCGGCCUGUGGUGGUCUCUGCCACGCAUCCCACACUGCCUUCUGCCCACCAGCCUCCUGUGAUCCCUGCCACACACCCAGCUUUGUCCCGUGACCACCAGAUCCCCGUGAUCGCAGCCAACUAUCCAGAUCUGCCUUCUGCCUACCAACCCGGUAUUCUCUCUGUCUCUCAUUCAGCACAGCCUCCUGCCCACCAGCCCCCUAUGAUCUCAACCAAAUAUCCGGAGCUCUUCCCUGCCCACCAGUCCCCCAUGUUUCCAGACACCCGGGUCGCUGGCACCCAGACCACCACUCAUUUGCCUGGAAUCCCACCUAACCAUGCCCCUCUGGUCACCACCCUCGGUGCCCAGCUACCCCCUCAAGCCCCAGAUGCCCUUGUCCUCAGAACCCAGGCCACCCAGCUUCCCAUUAUCCCAACUGCCCAGCCCUCUCUGACCACCACCUCCAGGUCCCCUGUGUCUCCUGCCCAUCAAAUCUCUGUGCCUGCUGCCACCCAGCCCGCAGCCCUCCCCACCCUCCUGCCCUCUCAGAGCCCCACUAACCAGACCUCACCCAUCAGCCCUACACAUCCCCAUUCCAAAGCCCCCCAAAUCCCAAGGGAAGAUGGCCCCAGUCCCAAGUUGGCCCUGUGGCUGCCCUCACCAGCUCCCACAGCAGCCCCAACAGCCCUGGGGGAGGCUGGUCUUGCCGAGCACAGCCAGAGGGAUGACCGGUGGCUGCUGGUGGCACUCCUGGUGCCAACGUGUGUCUUUUUGGUGGUCCUGCUUGCACUGGGCAUCGUGUACUGCACCCGCUGUGGCCCCCAUGCACCCAACAAGCGCAUCACUGACUGCUAUCGCUGGGUCAUCCAUGCUGGGAGCAAGAGCCCAACAGAACCCAUGCCCCCCAGGGGCAGCCUCACAGGGGUGCAGACCUGCAGAACCAGCGUGUGAUGGGGUGCAGACCCCCCUCAUGGAGUAUGGGGCGCUGGACACAUGGCCGGGGCUGCACCAGGGACCCAUGGGGGCUGCCCAGCUGGACAGAUGGCUUCCUGCUCCCCAGGCCCAGCCAGGGUCCUCUCUCAACCACUAGACUUGGCUCUCAGGAACUCUGCUUCCUGGCCCAGCGCUCGUGACCAAGGAUACACCAAAGCCCUUAAGACCUCAGGGGGCGGGUGCUGGGGUCUUCUCCAAUAAAUGGGGUGUCAACCUUA-3'- Poly-A tail
- Coding region
DNA
DNA (Gene ID: 57124)
CD248 molecule
strand -
NCBI CDS gene sequence (2274 bp)
5'-ATGCTGCTGCGCCTGTTGCTGGCCTGGGCGGCCGCAGGGCCCACACTGGGCCAGGACCCCTGGGCTGCTGAGCCCCGTGCCGCCTGCGGCCCCAGCAGCTGCTACGCTCTCTTCCCACGGCGCCGCACCTTCCTGGAGGCCTGGCGGGCCTGCCGCGAGCTGGGGGGCGACCTGGCCACTCCTCGGACCCCCGAGGAGGCCCAGCGTGTGGACAGCCTGGTGGGTGCGGGCCCAGCCAGCCGGCTGCTGTGGATCGGGCTGCAGCGGCAGGCCCGGCAATGCCAGCTGCAGCGCCCACTGCGCGGCTTCACGTGGACCACAGGGGACCAGGACACGGCTTTCACCAACTGGGCCCAGCCAGCCTCTGGAGGCCCCTGCCCGGCCCAGCGCTGTGTGGCCCTGGAGGCAAGTGGCGAGCACCGCTGGCTGGAGGGCTCGTGCACGCTGGCTGTCGACGGCTACCTGTGCCAGTTTGGCTTCGAGGGCGCCTGCCCGGCGCTGCAAGATGAGGCGGGCCAGGCCGGCCCAGCCGTGTATACCACGCCCTTCCACCTGGTCTCCACAGAGTTTGAGTGGCTGCCCTTCGGCTCTGTGGCCGCTGTGCAGTGCCAGGCTGGCAGGGGAGCCTCTCTGCTCTGCGTGAAGCAGCCTGAGGGAGGTGTGGGCTGGTCACGGGCTGGGCCCCTGTGCCTGGGGACTGGCTGCAGCCCTGACAACGGGGGCTGCGAACACGAATGTGTGGAGGAGGTGGATGGTCACGTGTCCTGCCGCTGCACTGAGGGCTTCCGGCTGGCAGCAGACGGGCGCAGTTGCGAGGACCCCTGTGCCCAGGCTCCGTGCGAGCAGCAGTGTGAGCCCGGTGGGCCACAAGGCTACAGCTGCCACTGTCGCCTGGGTTTCCGGCCAGCGGAGGATGATCCGCACCGCTGTGTGGACACAGATGAGTGCCAGATTGCCGGTGTGTGCCAGCAGATGTGTGTCAACTACGTTGGTGGCTTCGAGTGTTATTGTAGCGAGGGACATGAGCTGGAGGCTGATGGCATCAGCTGCAGCCCTGCAGGGGCCATGGGTGCCCAGGCTTCCCAGGACCTCGGAGATGAGTTGCTGGATGACGGGGAGGATGAGGAAGATGAAGACGAGGCCTGGAAGGCCTTCAACGGTGGCTGGACGGAGATGCCTGGGATCCTGTGGATGGAGCCTACGCAGCCGCCTGACTTTGCCCTGGCCTATAGACCGAGCTTCCCAGAGGACAGAGAGCCACAGATACCCTACCCGGAGCCCACCTGGCCACCCCCGCTCAGTGCCCCCAGGGTCCCCTACCACTCCTCAGTGCTCTCCGTCACCCGGCCTGTGGTGGTCTCTGCCACGCATCCCACACTGCCTTCTGCCCACCAGCCTCCTGTGATCCCTGCCACACACCCAGCTTTGTCCCGTGACCACCAGATCCCCGTGATCGCAGCCAACTATCCAGATCTGCCTTCTGCCTACCAACCCGGTATTCTCTCTGTCTCTCATTCAGCACAGCCTCCTGCCCACCAGCCCCCTATGATCTCAACCAAATATCCGGAGCTCTTCCCTGCCCACCAGTCCCCCATGTTTCCAGACACCCGGGTCGCTGGCACCCAGACCACCACTCATTTGCCTGGAATCCCACCTAACCATGCCCCTCTGGTCACCACCCTCGGTGCCCAGCTACCCCCTCAAGCCCCAGATGCCCTTGTCCTCAGAACCCAGGCCACCCAGCTTCCCATTATCCCAACTGCCCAGCCCTCTCTGACCACCACCTCCAGGTCCCCTGTGTCTCCTGCCCATCAAATCTCTGTGCCTGCTGCCACCCAGCCCGCAGCCCTCCCCACCCTCCTGCCCTCTCAGAGCCCCACTAACCAGACCTCACCCATCAGCCCTACACATCCCCATTCCAAAGCCCCCCAAATCCCAAGGGAAGATGGCCCCAGTCCCAAGTTGGCCCTGTGGCTGCCCTCACCAGCTCCCACAGCAGCCCCAACAGCCCTGGGGGAGGCTGGTCTTGCCGAGCACAGCCAGAGGGATGACCGGTGGCTGCTGGTGGCACTCCTGGTGCCAACGTGTGTCTTTTTGGTGGTCCTGCTTGCACTGGGCATCGTGTACTGCACCCGCTGTGGCCCCCATGCACCCAACAAGCGCATCACTGACTGCTATCGCTGGGTCATCCATGCTGGGAGCAAGAGCCCAACAGAACCCATGCCCCCCAGGGGCAGCCTCACAGGGGTGCAGACCTGCAGAACCAGCGTGTGA-3'
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