HumanLectome - Human Lectin Entry

NCBI Summary

The protein encoded by this gene is an axonal glycoprotein belonging to the immunoglobulin supergene family. The ectodomain, consisting of several immunoglobulin-like domains and fibronectin-like repeats (type III), is linked via a single transmembrane sequence to a conserved cytoplasmic domain. This cell adhesion molecule plays an important role in nervous system development, including neuronal migration and differentiation. Mutations in the gene cause X-linked neurological syndromes known as CRASH (corpus callosum hypoplasia, retardation, aphasia, spastic paraplegia and hydrocephalus). Alternative splicing of this gene results in multiple transcript variants, some of which include an alternate exon that is considered to be specific to neurons. [provided by RefSeq, May 2013].

Protein name

L1 cell adhesion molecule

Synonym(s)

Neural cell adhesion molecule L1 (N-CAM-L1) (NCAM-L1) (CD antigen CD171)

HGNC gene name

L1CAM

HGNC name

L1 cell adhesion molecule

Protein_CD_name

CD171

Lectin confidence

Curated

UniLectin class

I-type lectin

Known lectin group

I-Type Lectins

Lectin fold

b-sandwich / Ig-like

Glycan specificity

NeuAc

RefSeq accession

NP_000416

Gene ID

3897

UniProt accession

P32004

Ensembl protein ID

Undefined

UniRef cluster ID

P32004

LectomeXplore score

0.252

Reference

10.1074/jbc.M101790200

Other links

neXtProt, PFAM, InterPro

Protein sequence and protein families (fasta) (1257 amino acids) Download

MVVALRYVWPLLLCSPCLLIQIPEEYEGHHVMEPPVITEQSPRRLVVFPTDDISLKCEASGKPEVQFRWTRDGVHFKPKEELGVTVYQSPHSGSFTITGNNSNFAQRFQGIYRCFASNKLGTAMSHEIRLMAEGAPKWPKETVKPVEVEEGESVVLPCNPPPSAEPLRIYWMNSKILHIKQDERVTMGQNGNLYFANVLTSDNHSDYICHAHFPGTRTIIQKEPIDLRVKATNSMIDRKPRLLFPTNSSSHLVALQGQPLVLECIAEGFPTPTIKWLRPSGPMPADRVTYQNHNKTLQLLKVGEEDDGEYRCLAENSLGSARHAYYVTVEAAPYWLHKPQSHLYGPGETARLDCQVQGRPQPEVTWRINGIPVEELAKDQKYRIQRGALILSNVQPSDTMVTQCEARNRHGLLLANAYIYVVQLPAKILTADNQTYMAVQGSTAYLLCKAFGAPVPSVQWLDEDGTTVLQDERFFPYANGTLGIRDLQANDTGRYFCLAANDQNNVTIMANLKVKDATQITQGPRSTIEKKGSRVTFTCQASFDPSLQPSITWRGDGRDLQELGDSDKYFIEDGRLVIHSLDYSDQGNYSCVASTELDVVESRAQLLVVGSPGPVPRLVLSDLHLLTQSQVRVSWSPAEDHNAPIEKYDIEFEDKEMAPEKWYSLGKVPGNQTSTTLKLSPYVHYTFRVTAINKYGPGEPSPVSETVVTPEAAPEKNPVDVKGEGNETTNMVITWKPLRWMDWNAPQVQYRVQWRPQGTRGPWQEQIVSDPFLVVSNTSTFVPYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELEGIEILNSSAVLVKWRPVDLAQVKGHLRGYNVTYWREGSQRKHSKRHIHKDHVVVPANTTSVILSGLRPYSSYHLEVQAFNGRGSGPASEFTFSTPEGVPGHPEALHLECQSNTSLLLRWQPPLSHNGVLTGYVLSYHPLDEGGKGQLSFNLRDPELRTHNLTDLSPHLRYRFQLQATTKEGPGEAIVREGGTMALSGISDFGNISATAGENYSVVSWVPKEGQCNFRFHILFKALGEEKGGASLSPQYVSYNQSSYTQWDLQPDTDYEIHLFKERMFRHQMAVKTNGTGRVRLPPAGFATEGWFIGFVSAIILLLLVLLILCFIKRSKGGKYSVKDKEDTQVDSEARPMKDETFGEYRSLESDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGSFIGQYSGKKEKEAAGGNDSSGATSPINPAVALE

No structure currently available in the PDB RCSB Databank.

Structural models

AlphaFold v2: AF-P32004-F1 Download

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

SWISS-MODEL structural models

SWISS-MODEL structural model

Modeller structural model (Homology modelling pipeline), Error: [1.61, 2.1] Å Download

The location of the lectin domain structural model is: 144-328
We infer [1.61, 2.1] Å as the interval of error of this structural model.
Template 1: 5LFR chain: A, P20917, NP_001333015.1, sequence identity: 24.3%, coverage: 91.4%, location in sequence: 19-331, (19-331 in PDB).
Template 2: 2ZG1 chain: A, O15389, NP_003821.1, sequence identity: 15.1%, coverage: 54.1%, location in sequence: 20-141, (25-146 in PDB).
Template 3: 5VKM chain: A, P20273, NP_001762.2, sequence identity: 12.4%, coverage: 57.8%, location in sequence: 23-139, (23-139 in PDB).
Show the alignment used for the construction of the structural model, Download.
Show the plot of DOPE energy score, Download.

Expression

Human Protein Atlas

GeneCards

mRNA expression in normal human tissues for L1CAM Gene

ProteomicsDB

References

NCBI References (10 PubMed Identifiers)

L1CAM is not associated with extracellular vesicles in human cerebrospinal fluid or plasma. [34092791]

Full-length L1CAM and not its Delta2Delta27 splice variant promotes metastasis through induction of gelatinase expression. [21541352]

L1CAM expression in endometrial carcinomas is regulated by usage of two different promoter regions. [20799950]

Hereditary Spastic Paraplegia Overview [20301682]

L1 Syndrome [20301657]

Hirschsprung Disease Overview [20301612]

Aberrant splicing of neural cell adhesion molecule L1 mRNA in a family with X-linked hydrocephalus. [1303258]

Molecular cloning of cell adhesion molecule L1 from human nervous tissue: a comparison of the primary sequences of L1 molecules of different origin. [1932117]

Molecular structure and functional testing of human L1CAM: an interspecies comparison. [1769655]

The gene encoding L1, a neural adhesion molecule of the immunoglobulin family, is located on the X chromosome in mouse and man. [2387585]

UniProt Main References (47 PubMed Identifiers)

Variants of human L1 cell adhesion molecule arise through alternate splicing of RNA. [1627459]

Genomic organization of two novel genes on human Xq28: compact head to head arrangement of IDH gamma and TRAP delta is conserved in rat and mouse. [9286695]

The neural cell adhesion molecule L1: genomic organisation and differential splicing is conserved between man and the pufferfish Fugu. [9479034]

The DNA sequence of the human X chromosome. [15772651]

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). [15489334]

A human brain glycoprotein related to the mouse cell adhesion molecule L1. [3136168]

PCR walking from microdissection clone M54 identifies three exons from the human gene for the neural cell adhesion molecule L1 (CAM-L1). [1923824]

Isolation and sequence of partial cDNA clones of human L1: homology of human and rodent L1 in the cytoplasmic region. [1993895]

Casein kinase II phosphorylates the neural cell adhesion molecule L1. [8592152]

Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. [16335952]

A quantitative atlas of mitotic phosphorylation. [18669648]

Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry. [19159218]

Genotype-phenotype correlations in L1 syndrome: a guide for genetic counselling and mutation analysis. [19846429]

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. [20068231]

Initial characterization of the human central proteome. [21269460]

System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. [21406692]

Pathomechanistic characterization of two exonic L1CAM variants located in trans in an obligate carrier of X-linked hydrocephalus. [22222883]

Toward a comprehensive characterization of a human cancer cell phosphoproteome. [23186163]

A missense mutation confirms the L1 defect in X-linked hydrocephalus (HSAS) [8401576]

X-linked hydrocephalus and MASA syndrome present in one family are due to a single missense mutation in exon 28 of the L1CAM gene. [7881431]

X-linked spastic paraplegia (SPG1), MASA syndrome and X-linked hydrocephalus result from mutations in the L1 gene. [7920659]

MASA syndrome is due to mutations in the neural cell adhesion gene L1CAM. [7920660]

New domains of neural cell-adhesion molecule L1 implicated in X-linked hydrocephalus and MASA syndrome. [7762552]

CRASH syndrome: clinical spectrum of corpus callosum hypoplasia, retardation, adducted thumbs, spastic paraparesis and hydrocephalus due to mutations in one single gene, L1. [8556302]

Mutations in L1-CAM in two families with X linked complicated spastic paraplegia, MASA syndrome, and HSAS. [7562969]

A new mutation of the L1CAM gene in an X-linked hydrocephalus family. [9118141]

Five novel mutations in the L1CAM gene in families with X linked hydrocephalus. [8929944]

Molecular analysis of the L1CAM gene in patients with X-linked hydrocephalus demonstrates eight novel mutations and suggests non-allelic heterogeneity of the trait. [9268105]

L1-associated diseases: clinical geneticists divide, molecular geneticists unite. [9300653]

Nine novel L1 CAM mutations in families with X-linked hydrocephalus. [9195224]

Multiple exon screening using restriction endonuclease fingerprinting (REF): detection of six novel mutations in the L1 cell adhesion molecule (L1CAM) gene. [9521424]

Evidence for somatic and germline mosaicism in CRASH syndrome. [9452110]

Identification of novel L1CAM mutations using fluorescence-assisted mismatch analysis. [9744477]

The site of a missense mutation in the extracellular Ig or FN domains of L1CAM influences infant mortality and the severity of X linked hydrocephalus. [9832035]

Spectrum and detection rate of L1CAM mutations in isolated and familial cases with clinically suspected L1-disease. [10797421]

Novel missense mutation in the L1 gene in a child with corpus callosum agenesis, retardation, adducted thumbs, spastic paraparesis, and hydrocephalus. [10805190]

Hydrocephalus and intestinal aganglionosis: is L1CAM a modifier gene in Hirschsprung disease? [11857550]

X-linked hydrocephalus: a novel missense mutation in the L1CAM gene. [12435569]

The C264Y missense mutation in the extracellular domain of L1 impairs protein trafficking in vitro and in vivo. [12514225]

Expanding the phenotypic spectrum of L1CAM-associated disease. [16650080]

A novel missense mutation in the L1CAM gene in a boy with L1 disease. [16816908]

L1 syndrome mutations impair neuronal L1 function at different levels by divergent mechanisms. [20621658]

Association of X-linked hydrocephalus and Hirschsprung disease: report of a new patient with a mutation in the L1CAM gene. [22344793]

L1CAM and its cell-surface mutants: new mechanisms and effects relevant to the physiology and pathology of neural cells. [22973895]

Differential effects of human L1CAM mutations on complementing guidance and synaptic defects in Drosophila melanogaster. [24155914]

L1 syndrome diagnosis complemented with functional analysis of L1CAM variants located to the two N-terminal Ig-like domains. [26891472]

All isoforms of this gene containing a lectin domain

NP_076493.1, NP_000416.1, NP_001265045.1, NP_001137435.1

RNA

RNA (Transcript ID: NM_000425.5)

RNA RefSeq ID

NM_000425.5

RNA name

L1 cell adhesion molecule, transcript variant 1

Isoforms

All isoforms of L1CAM containing a lectin domain

RNA Ensembl ID

Coding region

179..3952 (or 153862663.. 153875836)

mRNA location

153861516.. 153876014

NCBI Matured mRNA sequence 5099 NTP Download

m⁷G-5')ppp(5'-AGUCACUAACGUCCUUCCGUUCUCUCGUCUCUCUUCCCCCACCCUUCCCUUCCCUUCUCCCCUCUCCCAGUGCCCCCACUCCCAACUCCCGCCCCAAGCCGCCCACCAGCCCCCUUCCCCUCCGGCCGGAGCCUGAACCGAGCCCGGCUGGCUGUGCUGCGCGGUGCCGCCGGGAAAGAUGGUCGUGGCGCUGCGGUACGUGUGGCCUCUCCUCCUCUGCAGCCCCUGCCUGCUUAUCCAGAUCCCCGAGGAAUAUGAAGGACACCAUGUGAUGGAGCCACCUGUCAUCACGGAACAGUCUCCACGGCGCCUGGUUGUCUUCCCCACAGAUGACAUCAGCCUCAAGUGUGAGGCCAGUGGCAAGCCCGAAGUGCAGUUCCGCUGGACGAGGGAUGGUGUCCACUUCAAACCCAAGGAAGAGCUGGGUGUGACCGUGUACCAGUCGCCCCACUCUGGCUCCUUCACCAUCACGGGCAACAACAGCAACUUUGCUCAGAGGUUCCAGGGCAUCUACCGCUGCUUUGCCAGCAAUAAGCUGGGCACCGCCAUGUCCCAUGAGAUCCGGCUCAUGGCCGAGGGUGCCCCCAAGUGGCCAAAGGAGACAGUGAAGCCCGUGGAGGUGGAGGAAGGGGAGUCAGUGGUUCUGCCUUGCAACCCUCCCCCAAGUGCAGAGCCUCUCCGGAUCUACUGGAUGAACAGCAAGAUCUUGCACAUCAAGCAGGACGAGCGGGUGACGAUGGGCCAGAACGGCAACCUCUACUUUGCCAAUGUGCUCACCUCCGACAACCACUCAGACUACAUCUGCCACGCCCACUUCCCAGGCACCAGGACCAUCAUUCAGAAGGAACCCAUUGACCUCCGGGUCAAGGCCACCAACAGCAUGAUUGACAGGAAGCCGCGCCUGCUCUUCCCCACCAACUCCAGCAGCCACCUGGUGGCCUUGCAGGGGCAGCCAUUGGUCCUGGAGUGCAUCGCCGAGGGCUUUCCCACGCCCACCAUCAAAUGGCUGCGCCCCAGUGGCCCCAUGCCAGCCGACCGUGUCACCUACCAGAACCACAACAAGACCCUGCAGCUGCUGAAAGUGGGCGAGGAGGAUGAUGGCGAGUACCGCUGCCUGGCCGAGAACUCACUGGGCAGUGCCCGGCAUGCGUACUAUGUCACCGUGGAGGCUGCCCCGUACUGGCUGCACAAGCCCCAGAGCCAUCUAUAUGGGCCAGGAGAGACUGCCCGCCUGGACUGCCAAGUCCAGGGCAGGCCCCAACCAGAGGUCACCUGGAGAAUCAACGGGAUCCCUGUGGAGGAGCUGGCCAAAGACCAGAAGUACCGGAUUCAGCGUGGCGCCCUGAUCCUGAGCAACGUGCAGCCCAGUGACACAAUGGUGACCCAAUGUGAGGCCCGCAACCGGCACGGGCUCUUGCUGGCCAAUGCCUACAUCUACGUUGUCCAGCUGCCAGCCAAGAUCCUGACUGCGGACAAUCAGACGUACAUGGCUGUCCAGGGCAGCACUGCCUACCUUCUGUGCAAGGCCUUCGGAGCGCCUGUGCCCAGUGUUCAGUGGCUGGACGAGGAUGGGACAACAGUGCUUCAGGACGAACGCUUCUUCCCCUAUGCCAAUGGGACCCUGGGCAUUCGAGACCUCCAGGCCAAUGACACCGGACGCUACUUCUGCCUGGCUGCCAAUGACCAAAACAAUGUUACCAUCAUGGCUAACCUGAAGGUUAAAGAUGCAACUCAGAUCACUCAGGGGCCCCGCAGCACAAUCGAGAAGAAAGGUUCCAGGGUGACCUUCACGUGCCAGGCCUCCUUUGACCCCUCCUUGCAGCCCAGCAUCACCUGGCGUGGGGACGGUCGAGACCUCCAGGAGCUUGGGGACAGUGACAAGUACUUCAUAGAGGAUGGGCGCCUGGUCAUCCACAGCCUGGACUACAGCGACCAGGGCAACUACAGCUGCGUGGCCAGUACCGAACUGGAUGUGGUGGAGAGUAGGGCACAGCUCUUGGUGGUGGGGAGCCCUGGGCCGGUGCCACGGCUGGUGCUGUCCGACCUGCACCUGCUGACGCAGAGCCAGGUGCGCGUGUCCUGGAGUCCUGCAGAAGACCACAAUGCCCCCAUUGAGAAAUAUGACAUUGAAUUUGAGGACAAGGAAAUGGCGCCUGAAAAAUGGUACAGUCUGGGCAAGGUUCCAGGGAACCAGACCUCUACCACCCUCAAGCUGUCGCCCUAUGUCCACUACACCUUUAGGGUUACUGCCAUAAACAAAUAUGGCCCCGGGGAGCCCAGCCCGGUCUCUGAGACUGUGGUCACACCUGAGGCAGCCCCAGAGAAGAACCCUGUGGAUGUGAAGGGGGAAGGAAAUGAGACCACCAAUAUGGUCAUCACGUGGAAGCCGCUCCGGUGGAUGGACUGGAACGCCCCCCAGGUUCAGUACCGCGUGCAGUGGCGCCCUCAGGGGACACGAGGGCCCUGGCAGGAGCAGAUUGUCAGCGACCCCUUCCUGGUGGUGUCCAACACGUCCACCUUCGUGCCCUAUGAGAUCAAAGUCCAGGCCGUCAACAGCCAGGGCAAGGGACCAGAGCCCCAGGUCACUAUCGGCUACUCUGGAGAGGACUACCCCCAGGCAAUCCCUGAGCUGGAAGGCAUUGAAAUCCUCAACUCAAGUGCCGUGCUGGUCAAGUGGCGGCCGGUGGACCUGGCCCAGGUCAAGGGCCACCUCCGCGGAUACAAUGUGACGUACUGGAGGGAGGGCAGUCAGAGGAAGCACAGCAAGAGACAUAUCCACAAAGACCAUGUGGUGGUGCCCGCCAACACCACCAGUGUCAUCCUCAGUGGCUUGCGGCCCUAUAGCUCCUACCACCUGGAGGUGCAGGCCUUUAACGGGCGAGGAUCGGGGCCCGCCAGCGAGUUCACCUUCAGCACCCCAGAGGGAGUGCCUGGCCACCCCGAGGCGUUGCACCUGGAGUGCCAGUCGAACACCAGCCUGCUGCUGCGCUGGCAGCCCCCACUCAGCCACAACGGCGUGCUCACCGGCUACGUGCUCUCCUACCACCCCCUGGAUGAGGGGGGCAAGGGGCAACUGUCCUUCAACCUUCGGGACCCCGAACUUCGGACACACAACCUGACCGAUCUCAGCCCCCACCUGCGGUACCGCUUCCAGCUUCAGGCCACCACCAAAGAGGGCCCUGGUGAAGCCAUCGUACGGGAAGGAGGCACUAUGGCCUUGUCUGGGAUCUCAGAUUUUGGCAACAUCUCAGCCACAGCGGGUGAAAACUACAGUGUCGUCUCCUGGGUCCCCAAGGAGGGCCAGUGCAACUUCAGGUUCCAUAUCUUGUUCAAAGCCUUGGGAGAAGAGAAGGGUGGGGCUUCCCUUUCGCCACAGUAUGUCAGCUACAACCAGAGCUCCUACACGCAGUGGGACCUGCAGCCUGACACUGACUACGAGAUCCACUUGUUUAAGGAGAGGAUGUUCCGGCACCAAAUGGCUGUGAAGACCAAUGGCACAGGCCGCGUGAGGCUCCCUCCUGCUGGCUUCGCCACUGAGGGCUGGUUCAUCGGCUUUGUGAGUGCCAUCAUCCUCCUGCUCCUCGUCCUGCUCAUCCUCUGCUUCAUCAAGCGCAGCAAGGGCGGCAAAUACUCAGUGAAGGAUAAGGAGGACACCCAGGUGGACUCUGAGGCCCGACCGAUGAAAGAUGAGACCUUCGGCGAGUACAGGUCCCUGGAGAGUGACAACGAGGAGAAGGCCUUUGGCAGCAGCCAGCCAUCGCUCAACGGGGACAUCAAGCCCCUGGGCAGUGACGACAGCCUGGCCGAUUAUGGGGGCAGCGUGGAUGUUCAGUUCAACGAGGAUGGUUCGUUCAUUGGCCAGUACAGUGGCAAGAAGGAGAAGGAGGCGGCAGGGGGCAAUGACAGCUCAGGGGCCACUUCCCCCAUCAACCCUGCCGUGGCCCUAGAAUAGUGGAGUCCAGGACAGGAGAUGCUGUGCCCCUGGCCUUGGGAUCCAGGCCCCUCCCUCUCCAGCAGGCCCAUGGGAGGCUGGAGUUGGGGCAGAGGAGAACUUGCUGCCUCGGAUCCCCUUCCUACCACCCGGUCCCCACUUUAUUGCCAAAACCCAGCUGCACCCCUUCCUGGGCACACGCUGCUCUGCCCCAGCUUGGGCAGAUCUCCCACAUGCCAGGGGCCUUUGGGUGCUGUUUUGCCAGCCCAUUUGGGCAGAGAGGCUGUGGUUUGGGGGAGAAGAAGUAGGGGUGGCCCGAAAGGGUCUCCGAAAUGCUGUCUUUCUUGCUCCCUGACUGGGGGCAGACAUGGUGGGGUCUCCUCAGGACCAGGGUUGGCACCUUCCCCCUCCCCCAGCCACUCCCCAGCCAGCCUGGCUGGGACUGGGAACAGAACUCGGUGUCCCCACCAUCUGCUGUCUUUUCUUUGCCAUCUCUGCUCCAACCGGGAUGGGAGCCGGGCAAACUGGCCGCGGGGGCAGGGGAGGCCAUCUGGAGAGCCCAGAGUCCCCCCACUCCCAGCAUCGCACUCUGGCAGCACCGCCUCUUCCCGCCGCCCAGCCCACCCCAUGGCCGGCUUUCAGGAGCUCCAUACACACGCUGCCUUCGGUACCCACCACACAACAUCCAAGUGGCCUCCGUCACUACCUGGCUGCGGGGCGGGCACACCUCCUCCCACUGCCCACUGGCCGGCCUCUUCCAGCCGCCCCCACCCCCCAGGACCCCUUAGCAGCCCUGCCCUCCCUAUCGUCUGAACAGUUGUCUUCCUCAGCCUCCUCCCGCCCCCACCUUGGGAAUGUAAAUACACCGUGACUUUGAAAGUUUGUACCCCUGUCCUUCCCUUUACGCCACUAGUGUGUAGGCAGAUGUCUGAGUCCCUAGGUGGUUUCUAGGAUUGAUAGCAAUUAGCUUUGAUGAACCCAUCCCAGGAAAAAUAAAAACAGACAAAAAAAAAGGAAAGAUUGGUUCUCCCAGCACUGCUCAGCAGCCACAGCCUCCCUGUAUGCCUGUGCUUGGUCUACUGAUAAGCCCUCUACAAAAAAACAAAAGUAUAUAUAUAUAUGUACAUAAUAUCAGAAUUAUAACAGGCAAAUAAAACCUGAAAAUCAA-3'- Poly-A tail

Coding region

NCBI Matured mRNA sequence viewer

;

More about the NCBI sViewer.

DNA

DNA (Gene ID: 3897)

HGNC Gene symbol

L1CAM

HGNC Gene name

L1 cell adhesion molecule

Chr. RefSeq ID

NC_000023.11

Chromosome N°

X 153862663.. 153875836

CDS location

153862663.. 153875836

DNA strand

strand -

CCDS ID

CCDS14733.1

Mouse ortholog gene

MGI:96721

Gene Variant

ClinVar, dbVar

DNA Ensembl ID

ENSG00000198910

HGNC other symbol

CD171, NCAM-L1, CAML1

UCSC ID

uc031tks.2

GeneBank

INSDC: M74387

GeneCards

6470

MIM

308840

VEGA ID

OTTHUMG00000024221

Other links

ENA, DDBJ, Monarch

CD gene name

CD171

NCBI CDS Gene viewer

More about the NCBI sViewer.

NCBI CDS gene sequence (3774 bp)

5'-ATGGTCGTGGCGCTGCGGTACGTGTGGCCTCTCCTCCTCTGCAGCCCCTGCCTGCTTATCCAGATCCCCGAGGAATATGAAGGACACCATGTGATGGAGCCACCTGTCATCACGGAACAGTCTCCACGGCGCCTGGTTGTCTTCCCCACAGATGACATCAGCCTCAAGTGTGAGGCCAGTGGCAAGCCCGAAGTGCAGTTCCGCTGGACGAGGGATGGTGTCCACTTCAAACCCAAGGAAGAGCTGGGTGTGACCGTGTACCAGTCGCCCCACTCTGGCTCCTTCACCATCACGGGCAACAACAGCAACTTTGCTCAGAGGTTCCAGGGCATCTACCGCTGCTTTGCCAGCAATAAGCTGGGCACCGCCATGTCCCATGAGATCCGGCTCATGGCCGAGGGTGCCCCCAAGTGGCCAAAGGAGACAGTGAAGCCCGTGGAGGTGGAGGAAGGGGAGTCAGTGGTTCTGCCTTGCAACCCTCCCCCAAGTGCAGAGCCTCTCCGGATCTACTGGATGAACAGCAAGATCTTGCACATCAAGCAGGACGAGCGGGTGACGATGGGCCAGAACGGCAACCTCTACTTTGCCAATGTGCTCACCTCCGACAACCACTCAGACTACATCTGCCACGCCCACTTCCCAGGCACCAGGACCATCATTCAGAAGGAACCCATTGACCTCCGGGTCAAGGCCACCAACAGCATGATTGACAGGAAGCCGCGCCTGCTCTTCCCCACCAACTCCAGCAGCCACCTGGTGGCCTTGCAGGGGCAGCCATTGGTCCTGGAGTGCATCGCCGAGGGCTTTCCCACGCCCACCATCAAATGGCTGCGCCCCAGTGGCCCCATGCCAGCCGACCGTGTCACCTACCAGAACCACAACAAGACCCTGCAGCTGCTGAAAGTGGGCGAGGAGGATGATGGCGAGTACCGCTGCCTGGCCGAGAACTCACTGGGCAGTGCCCGGCATGCGTACTATGTCACCGTGGAGGCTGCCCCGTACTGGCTGCACAAGCCCCAGAGCCATCTATATGGGCCAGGAGAGACTGCCCGCCTGGACTGCCAAGTCCAGGGCAGGCCCCAACCAGAGGTCACCTGGAGAATCAACGGGATCCCTGTGGAGGAGCTGGCCAAAGACCAGAAGTACCGGATTCAGCGTGGCGCCCTGATCCTGAGCAACGTGCAGCCCAGTGACACAATGGTGACCCAATGTGAGGCCCGCAACCGGCACGGGCTCTTGCTGGCCAATGCCTACATCTACGTTGTCCAGCTGCCAGCCAAGATCCTGACTGCGGACAATCAGACGTACATGGCTGTCCAGGGCAGCACTGCCTACCTTCTGTGCAAGGCCTTCGGAGCGCCTGTGCCCAGTGTTCAGTGGCTGGACGAGGATGGGACAACAGTGCTTCAGGACGAACGCTTCTTCCCCTATGCCAATGGGACCCTGGGCATTCGAGACCTCCAGGCCAATGACACCGGACGCTACTTCTGCCTGGCTGCCAATGACCAAAACAATGTTACCATCATGGCTAACCTGAAGGTTAAAGATGCAACTCAGATCACTCAGGGGCCCCGCAGCACAATCGAGAAGAAAGGTTCCAGGGTGACCTTCACGTGCCAGGCCTCCTTTGACCCCTCCTTGCAGCCCAGCATCACCTGGCGTGGGGACGGTCGAGACCTCCAGGAGCTTGGGGACAGTGACAAGTACTTCATAGAGGATGGGCGCCTGGTCATCCACAGCCTGGACTACAGCGACCAGGGCAACTACAGCTGCGTGGCCAGTACCGAACTGGATGTGGTGGAGAGTAGGGCACAGCTCTTGGTGGTGGGGAGCCCTGGGCCGGTGCCACGGCTGGTGCTGTCCGACCTGCACCTGCTGACGCAGAGCCAGGTGCGCGTGTCCTGGAGTCCTGCAGAAGACCACAATGCCCCCATTGAGAAATATGACATTGAATTTGAGGACAAGGAAATGGCGCCTGAAAAATGGTACAGTCTGGGCAAGGTTCCAGGGAACCAGACCTCTACCACCCTCAAGCTGTCGCCCTATGTCCACTACACCTTTAGGGTTACTGCCATAAACAAATATGGCCCCGGGGAGCCCAGCCCGGTCTCTGAGACTGTGGTCACACCTGAGGCAGCCCCAGAGAAGAACCCTGTGGATGTGAAGGGGGAAGGAAATGAGACCACCAATATGGTCATCACGTGGAAGCCGCTCCGGTGGATGGACTGGAACGCCCCCCAGGTTCAGTACCGCGTGCAGTGGCGCCCTCAGGGGACACGAGGGCCCTGGCAGGAGCAGATTGTCAGCGACCCCTTCCTGGTGGTGTCCAACACGTCCACCTTCGTGCCCTATGAGATCAAAGTCCAGGCCGTCAACAGCCAGGGCAAGGGACCAGAGCCCCAGGTCACTATCGGCTACTCTGGAGAGGACTACCCCCAGGCAATCCCTGAGCTGGAAGGCATTGAAATCCTCAACTCAAGTGCCGTGCTGGTCAAGTGGCGGCCGGTGGACCTGGCCCAGGTCAAGGGCCACCTCCGCGGATACAATGTGACGTACTGGAGGGAGGGCAGTCAGAGGAAGCACAGCAAGAGACATATCCACAAAGACCATGTGGTGGTGCCCGCCAACACCACCAGTGTCATCCTCAGTGGCTTGCGGCCCTATAGCTCCTACCACCTGGAGGTGCAGGCCTTTAACGGGCGAGGATCGGGGCCCGCCAGCGAGTTCACCTTCAGCACCCCAGAGGGAGTGCCTGGCCACCCCGAGGCGTTGCACCTGGAGTGCCAGTCGAACACCAGCCTGCTGCTGCGCTGGCAGCCCCCACTCAGCCACAACGGCGTGCTCACCGGCTACGTGCTCTCCTACCACCCCCTGGATGAGGGGGGCAAGGGGCAACTGTCCTTCAACCTTCGGGACCCCGAACTTCGGACACACAACCTGACCGATCTCAGCCCCCACCTGCGGTACCGCTTCCAGCTTCAGGCCACCACCAAAGAGGGCCCTGGTGAAGCCATCGTACGGGAAGGAGGCACTATGGCCTTGTCTGGGATCTCAGATTTTGGCAACATCTCAGCCACAGCGGGTGAAAACTACAGTGTCGTCTCCTGGGTCCCCAAGGAGGGCCAGTGCAACTTCAGGTTCCATATCTTGTTCAAAGCCTTGGGAGAAGAGAAGGGTGGGGCTTCCCTTTCGCCACAGTATGTCAGCTACAACCAGAGCTCCTACACGCAGTGGGACCTGCAGCCTGACACTGACTACGAGATCCACTTGTTTAAGGAGAGGATGTTCCGGCACCAAATGGCTGTGAAGACCAATGGCACAGGCCGCGTGAGGCTCCCTCCTGCTGGCTTCGCCACTGAGGGCTGGTTCATCGGCTTTGTGAGTGCCATCATCCTCCTGCTCCTCGTCCTGCTCATCCTCTGCTTCATCAAGCGCAGCAAGGGCGGCAAATACTCAGTGAAGGATAAGGAGGACACCCAGGTGGACTCTGAGGCCCGACCGATGAAAGATGAGACCTTCGGCGAGTACAGGTCCCTGGAGAGTGACAACGAGGAGAAGGCCTTTGGCAGCAGCCAGCCATCGCTCAACGGGGACATCAAGCCCCTGGGCAGTGACGACAGCCTGGCCGATTATGGGGGCAGCGTGGATGTTCAGTTCAACGAGGATGGTTCGTTCATTGGCCAGTACAGTGGCAAGAAGGAGAAGGAGGCGGCAGGGGGCAATGACAGCTCAGGGGCCACTTCCCCCATCAACCCTGCCGTGGCCCTAGAATAG-3'

NCBI CDS gene sequence with introns (location: 153862663.. 153875836) (13174 bp)Download

NCBI Gene Viewer (CDS + introns)

NCBI CDS gene sequence with introns, 5'UTR and 3'UTR (location: 153861516.. 153876014) (14499 bp)Download

NCBI Gene Viewer (CDS + introns + Untranslated regions)

NCBI gene sequence (location: [153861516.. 153876014 + 1000]) (15499 bp)Download

NCBI Gene Viewer (CDS + introns + Untranslated regions + 1000 dNTP to potentially reach the promotor)

How to cite: