Protein
Protein (XP_035717074)
C-type lectin domain family 20 member A
Putative C-type lectin domain family 20 member A
CLEC20A
C-type lectin domain containing 20A
Undefined
Very low evidence
C-type lectin
Undefined
Undefined
a/b mixed / C-type lectin-like
Uncharacterised
XP_035717074
400797
Q6ZU45
Undefined
Q6ZU45
0.151
Undefined
neXtProt, PFAM, InterPro
Protein sequence and protein families (fasta) (414 amino acids) Download
MDLFRILQAASPAPHTLLAATDTGPRQLRGLVPCPASTQPSPSQCPAMLPRALLLSFCAAALQLVSSKRDLVLVKEALSWYDAQQHCRLHYTDLADLQPSGLWKLYSLMTSTPAWIGLFFDASTSGLRWSSGSTFTALEWGQKLPEFGVGFCATLYTWLKLPSIGAASCTAQKPFLCYCDPDVGHLISTKPSLSLTTSPKPAVVQISGQTFMRFDQVMTWSSALLYCRSHHTDLADLQMVTDETGKEALRSIMSETEAWIGLYLNANSGSLSWSSDLGASIPSWLQVPMMVRGLCTALGIYMTYSPKVYSVNCSSLLPFFCFYAVASVGSGTDRRDTAAATEAQHLSSESKEKTSAQKSGHPFGILKADFTISTLMDPEEMKDQFLRQIQEVLKLTLGHEQFRLKWVSFEVNKK
No structure currently available in the PDB RCSB Databank.
Structural models
AlphaFold v2: AF-Q6ZU45-F1DownloadSee the associated sequence to the AlphaFold v2 model, which is different to this entry(NCBI sequence).
  Model Confidence:
  •    Very high (pLDDT > 90)
  •    Confident (90 > pLDDT > 70)
  •    Low (70 > pLDDT > 50)
  •    Very low (pLDDT < 50)

  AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

SWISS-MODEL structural models
SWISS-MODEL structural model
Modeller structural model (Homology modelling pipeline), Error: [ err > 2 Å]Download
The location of the lectin domain structural model is: 159-275
We infer [ err > 2 Å] as the interval of error of this structural model.
Template 1: 6BBD chain: A, Q9N1X4, NP_999275.1, sequence identity: 15.4%, coverage: 83.8%, location in sequence: 225-378, (205-358 in PDB).
Template 2: 3WHD chain: C, Q8WXI8, NP_525126.2, sequence identity: 12.8%, coverage: 81.2%, location in sequence: 63-215, (63-215 in PDB).
Template 3: 6JJJ chain: A, P70194, NP_058031.2, sequence identity: 15.4%, coverage: 72.6%, location in sequence: 393-543, (393-543 in PDB).
Show the alignment used for the construction of the structural model, Download.
Show the plot of DOPE energy score, Download.
Ligand
Glycan ligands from structural data
No crystal structures of complexes with glycan ligand.
Expression
Human Protein Atlas
GeneCards
mRNA expression in normal human tissues for CLEC20A Gene
References
UniProt Main References (2 PubMed Identifiers)
  • The DNA sequence and biological annotation of human chromosome 1. [16710414]
  • Complete sequencing and characterization of 21,243 full-length human cDNAs. [14702039]
RNA
RNA (Transcript ID: XM_035861181.1)
XM_035861181.1
C-type lectin domain containing 20A, transcript variant X1
All isoforms of CLEC20A containing a lectin domain
89..1333 (or 178479535.. 178499535)
178478153.. 178499623
NCBI Matured mRNA sequence 2715 NTPDownload 
m7G-5')ppp(5'-GAGGAAAAAGGAGGCCAGUCCAAAUCCCAAAGCUGAAGAACUCGGAGUCCGAUGUUCAAGGGCAGGAAGCAUCGAGCACGGGAGAACGAUGGAUCUCUUCCGCAUCCUCCAGGCCGCAUCUCCAGCACCUCACACCCUGCUGGCAGCGACAGACACUGGUCCCCGCCAGCUCCGGGGUCUUGUCCCGUGCCCAGCCAGCACCCAGCCAUCGCCCAGCCAGUGCCCAGCCAUGCUGCCCCGGGCGCUGCUGCUCUCCUUCUGCGCAGCAGCCCUGCAGCUGGUGAGCAGUAAGAGGGACUUGGUUCUGGUGAAGGAGGCGCUGAGCUGGUACGACGCCCAGCAGCACUGCCGGCUGCACUACACAGACCUCGCUGACCUGCAGCCAAGUGGCCUGUGGAAGCUCUACUCCCUCAUGACCAGCACCCCGGCUUGGAUUGGCCUCUUCUUCGACGCAAGCACUUCUGGCCUGAGAUGGUCCAGCGGCUCCACCUUCACAGCCCUGGAGUGGGGCCAGAAGCUACCUGAAUUUGGGGUGGGCUUCUGUGCCACGCUGUACACUUGGCUGAAAUUACCCAGCAUAGGGGCUGCCUCCUGCACAGCCCAGAAGCCCUUCCUCUGCUACUGUGACCCUGACGUCGGGCACCUCAUCUCCACGAAGCCCUCUCUCAGCCUGACCACCUCUCCAAAGCCAGCUGUGGUCCAGAUCAGUGGUCAGACCUUCAUGCGAUUUGACCAAGUGAUGACAUGGUCCUCGGCCCUGCUGUACUGCCGCAGCCACCACACGGAUCUGGCCGACCUGCAGAUGGUGACGGAUGAGACAGGCAAGGAGGCCUUGAGAUCCAUCAUGAGUGAGACUGAAGCCUGGAUUGGCCUCUACCUCAAUGCAAACUCCGGAUCUCUGAGCUGGUCCAGUGACCUGGGGGCCAGCAUCCCCUCCUGGCUGCAGGUGCCGAUGAUGGUGAGAGGACUGUGCACAGCUCUUGGCAUCUAUAUGACCUACUCCCCAAAAGUGUACUCAGUGAACUGCUCUUCCCUGCUGCCCUUCUUCUGCUUCUAUGCUGUGGCCAGUGUAGGGAGUGGCACUGAUAGAAGAGAUACAGCUGCUGCCACGGAGGCCCAACAUCUGAGUUCAGAAUCUAAAGAAAAAACAUCAGCACAAAAAUCAGGGCACCCUUUUGGAAUCUUGAAAGCAGACUUUACCAUCUCAACUCUGAUGGACCCAGAAGAGAUGAAAGACCAAUUUCUGAGACAGAUCCAGGAAGUCUUAAAGCUUACAUUAGGUCACGAACAAUUUAGACUGAAAUGGGUCAGCUUCGAAGUGAACAAAAAAUAGCACAAUUCUUGGAUAUGCAGUUUCUGUUUCAUGCAAUCUUCUCUGGAUUUUGAGUAAAUUUUAAUUUUUUAAUCCCUAGUAGAACAAGAUUAGGAAGAACUCGACAUGUGCCAAAAAGCACAGACCUACAACUAACACAAAACAAGACUACACAUGAAACCUGCAUCCCUGGAUUUUACAGAAUGAAACAGGGAUGCAGGAGAAGAUGGGUGUAUUUGGGAACAAUCAUGUUGGGAAUGACAAAUGAACUUCUAUUAAGAAAUUAAAAUAAAAAACCUGAACCAAACAUCAAAAAUCCUGAAAACAAACCCCAUUAAUCUAACUGGAAAAUUACAAGAGGAUGGUAGUGGUCUAGGAAGCUAAGUGGGGCUACAUUUCCUAAUAAACCAGAUGAAACUUUCUUUACCUGUCACAAGUUAUUAAAGAGAUUUCAAAUUCUGCAGAAUUCGAAAGUAACAGUUUUAUCACAAUACAUGCUAAUGCUAGUUAUUUUUCCUAAAUUGAAAUCUUAUUACAUGGAAGUUGGGAAAUUCUAGGACAGACUGUUCUUAAUGUUAAAAUAUAUUUUUAGAAGAAUAUUCCGGCAUACAUUUCCUUUCUUGUUUCUCUUCAAGUGUCCUAGUCACCCAGGUGCAUGCUAGAAGACAGCAAUAUGUCAAAUAUAGUAGCAACUUUAGUCUGAAAUGUUUAAAGUUAAAGUUUAUUUGUAUUCUUUGUAGGAAUAUCAAUAAAAGACCUCAAACGUAUCUAUAUCUGUACAUGUACAAGAACUGUCAAAAAUUAUUCACAGAACAAAAAUAAAUCUUCUUUAGAACAAACCCAGGUAAUGAAAUGCUGAUACGGAUCUCACAUACGGAAUAAUCUAAAUGCUACUAGCACAAAAAUAUGGCUUUAAAAAUAAAAUAAAAUCUUGGGUUUUGUUUUUCUAAGGUGUAUUUCUCUUUCUUGAAAUAAAAAAUAAAUUAUUUAGAGCUAUCAUUGUAAAAUAGUCGUGUGUUAACACACUCUUAUUAAGGCCCUGGAGAUGAAAAACAAAAUCAAAUUUAGAAGGUCAUUUCCUCACAGGUGUAACUCAGGUUAAUGUGCUGCUGUCUGCUUAAGUUAAUAUAACUAGGAAAUGUCUAAGCACCAGUCAAAAUUUAACCUAAUUUACUAUUUAACUUUCCUGAAGGUGGUCAUUGAGUCAAUUAGUAUUUAACCUUUUGUUGAACUGGGAAUUGAAAUGUUUCCCUCGAAAAUUUGGAAAUCACAUAAAAUGAUAUUUACACAUAAAUAUCUGUACCCCCACAAAGAUGAUGGAGGUCCCUAAAACACAACUUCUGUGGAAAUCUCUCUACAACAACAAAUAAAUCUGGUUUUAAGUCUCAAACUAAAAAAAAAAA-3'- Poly-A tail
  • Coding region
NCBI Matured mRNA sequence viewer
;
More about the NCBI sViewer.
DNA
DNA (Gene ID: 400797)
CLEC20A
C-type lectin domain containing 20A
NC_000001.11
1  178479535.. 178499535
178479535.. 178499535
strand -
ClinVar, dbVar
ENSG00000188585
FLJ44005, RP4-593C16.2
uc057nok.1
INSDC: AK125993
34521
OTTHUMG00000035021
ENA, DDBJ, Monarch
NCBI CDS Gene viewer
More about the NCBI sViewer.
NCBI CDS gene sequence (1245 bp)
5'-ATGGATCTCTTCCGCATCCTCCAGGCCGCATCTCCAGCACCTCACACCCTGCTGGCAGCGACAGACACTGGTCCCCGCCAGCTCCGGGGTCTTGTCCCGTGCCCAGCCAGCACCCAGCCATCGCCCAGCCAGTGCCCAGCCATGCTGCCCCGGGCGCTGCTGCTCTCCTTCTGCGCAGCAGCCCTGCAGCTGGTGAGCAGTAAGAGGGACTTGGTTCTGGTGAAGGAGGCGCTGAGCTGGTACGACGCCCAGCAGCACTGCCGGCTGCACTACACAGACCTCGCTGACCTGCAGCCAAGTGGCCTGTGGAAGCTCTACTCCCTCATGACCAGCACCCCGGCTTGGATTGGCCTCTTCTTCGACGCAAGCACTTCTGGCCTGAGATGGTCCAGCGGCTCCACCTTCACAGCCCTGGAGTGGGGCCAGAAGCTACCTGAATTTGGGGTGGGCTTCTGTGCCACGCTGTACACTTGGCTGAAATTACCCAGCATAGGGGCTGCCTCCTGCACAGCCCAGAAGCCCTTCCTCTGCTACTGTGACCCTGACGTCGGGCACCTCATCTCCACGAAGCCCTCTCTCAGCCTGACCACCTCTCCAAAGCCAGCTGTGGTCCAGATCAGTGGTCAGACCTTCATGCGATTTGACCAAGTGATGACATGGTCCTCGGCCCTGCTGTACTGCCGCAGCCACCACACGGATCTGGCCGACCTGCAGATGGTGACGGATGAGACAGGCAAGGAGGCCTTGAGATCCATCATGAGTGAGACTGAAGCCTGGATTGGCCTCTACCTCAATGCAAACTCCGGATCTCTGAGCTGGTCCAGTGACCTGGGGGCCAGCATCCCCTCCTGGCTGCAGGTGCCGATGATGGTGAGAGGACTGTGCACAGCTCTTGGCATCTATATGACCTACTCCCCAAAAGTGTACTCAGTGAACTGCTCTTCCCTGCTGCCCTTCTTCTGCTTCTATGCTGTGGCCAGTGTAGGGAGTGGCACTGATAGAAGAGATACAGCTGCTGCCACGGAGGCCCAACATCTGAGTTCAGAATCTAAAGAAAAAACATCAGCACAAAAATCAGGGCACCCTTTTGGAATCTTGAAAGCAGACTTTACCATCTCAACTCTGATGGACCCAGAAGAGATGAAAGACCAATTTCTGAGACAGATCCAGGAAGTCTTAAAGCTTACATTAGGTCACGAACAATTTAGACTGAAATGGGTCAGCTTCGAAGTGAACAAAAAATAG-3'
NCBI CDS gene sequence with introns (location: 178479535.. 178499535) (20001 bp)Download
NCBI Gene Viewer (CDS + introns)
NCBI CDS gene sequence with introns, 5'UTR and 3'UTR (location: 178478153.. 178499623) (21471 bp)Download
NCBI Gene Viewer (CDS + introns + Untranslated regions)
NCBI gene sequence (location: [178478153.. 178499623 + 1000]) (22471 bp)Download
NCBI Gene Viewer (CDS + introns + Untranslated regions + 1000 dNTP to potentially reach the promotor)
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