UniLectin exploration platform and database for curated and predicted lectin carbohydrate binding proteins
Unilectin-API.
The following are the available endpoints for the UniLectin API.
Click on any of the links to see the available parameters and examples of how to use them.
The following are the available endpoints for the UniLectin API.
Click on any of the links to see the available parameters and examples of how to use them.
api/getlectins
Description
This endpoint enables you to perform queries on the lectin table.
It retrieves the content of the specified column (getcolumns) where another column (wherecolumn) has a specific value (isvalue).
The available columns for this table are:
- lectin_id
- pdb
- fold: lectin fold
- class: lectin class
- family: lectin family
- origin: lectin origin
- species: lectin species
- species_id: id of species
- resolution: experimental resolution
- comments
- cfg
- uniprot: id
- protein_name
- ligand
- monosac
- iupac
- ligand_link
- dt
Parameters
- getcolumn: string of which column needs to be fetched (one or multiple columns, separated by comma)
- wherecolumn: string of the focused column
- isvalue: string of what value need to be matched in wherecolumn (here, wildcards are also accepted such as "Rattus%" to match everything starting with "Rattus")
- limit: (optional) integer of the number of results to be returned (default: 1000, -1 for all)
Examples
-
Get all the Binding domains ids (pdb) and their UniProt ids:
-
Get lectome of a species:
-
Get all lectins that do have a ligand :
Query content
Show raw results
api/getlectinspredicted
Description
This endpoint enables you to perform queries on the predicted lectins table.
It retrieves the content of the specified column (getcolumns) where another column (wherecolumn) has a specific value (isvalue).
The available columns for this table are:
- protein_ac: UniProt i.e:A0A2P8WI18
- uniprot: i.e:A0A2P8WI18
- protein.protein_id: i.e:1182210
- protein.name: i.e:C-type lectin domain-containing protein (Fragment)
- fold: i.e:ab mixed C-type lectin-like
- domains.domains_id: i.e:128145
- length: i.e:1669
- alt_ac: NCBI protein i.e:PSN19462
- genus:
- gene: the gene (Chz/contig) i.e:PYEQ01000096.1
- gene_begin: i.e:6118
- gene_end: i.e:11124
- cluster: i.e:A0A2P8WI18
- strain: i.e:CCP5:
- species: i.e:filamentous cyanobacterium CCP5
- sgroup: i.e:filamentous cyanobacterium
- superkingdom: i.e:Bacteria
- kingdom: i.e:None
- phylum: i.e:Cyanobacteria
- domain: lectin class i.e:C-type lectin
- score: i.e:0.281
- pfam_name: i.e:HemolysinCabind |
- cazy: i.e:CBM57
- ref_seq: i.e:KKEVEKLKS--CPKKWKAFQGKCYFFSNEKKTWEEAEKACSERGAHLVVIKSAEEQEFLQ-QLSKSNSYWIGLTDEKTEGTWQWVDGSPLNYKNWAPGEPNNA...
- match_seq: i.e:TQQTN---TITIPNGVT-YNGSLYVLTDSVMTWLNAQAYAESLGGNLVTINDSTEENWIRSVFGTSEQFWIGLNDQAANTQFKWVSGEALTYTNFEPGRID...
Parameters
- getcolumn: string of which column needs to be fetched (one or multiple columns, separated by comma)
- wherecolumn: string of the focused column
- isvalue: string of what value need to be matched in wherecolumn (here, wildcards are also accepted such as "Rattus%" to match everything starting with "Rattus")
- limit: (optional) integer of the number of results to be returned (default: 1000, -1 for all)
Examples
-
Get the lectome of all proteins from the bacteria kingdom:
-
Get all predicted proteins:
Query content
Show raw results