SMTL ID : 7vwb.1

Phloem lectin (PP2) structure -complex with N-Acetyllactosamine (LacNAc)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NDG- GAL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG-GAL.1: 7 residues within 4Å: Chain A: T.18, W.19, Y.25, V.46, S.47, W.48, W.141 6 PLIP interactions: 6 interactions with chain A Water bridges: A:T.18, A:W.48 Hydrophobic interactions: A:Y.25, A:V.46, A:W.141 Hydrogen bonds: A:W.19, A:S.47, A:W.48 NDG-GAL.2: 7 residues within 4Å: Chain B: T.18, W.19, Y.25, V.46, S.47, W.48, W.141 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.19, B:Y.25, B:V.46, B:W.141 Hydrogen bonds: B:W.19, B:S.47, B:W.48

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: D.50, C.51, R.52, E.88, G.133, Y.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.50, A:R.52, A:E.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sivaji, N. et al., Structure and interactions of the phloem lectin (phloem protein 2) Cus17 from Cucumis sativus. Structure (2023)

Release Date

2023-03-08

Peptides

phloem lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

phloem lectin