SMTL ID : 7ee3.1

Crystal structure of PltC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

homo-pentamer

Ligands

5 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 10 residues within 4Å: Chain A: S.24, V.51, Y.54, G.55, N.56, V.86, W.87, R.88, D.89, F.92 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.24, A:R.88, A:D.89 Water bridges: A:G.55, A:G.55 PG4.2: 12 residues within 4Å: Chain B: Y.22, S.24, T.29, V.51, Y.54, G.55, V.86, W.87, R.88, D.89, F.92 Ligands: PG4.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.29, B:T.29, B:R.88, B:R.88, B:D.89 PG4.3: 8 residues within 4Å: Chain A: E.28 Chain B: V.53, Y.54, G.55, N.56, K.58, R.88 Ligands: PG4.2 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.55, B:G.55, B:N.56, B:K.58 PG4.4: 11 residues within 4Å: Chain D: Y.22, S.24, T.29, V.51, Y.54, G.55, V.86, W.87, R.88, D.89, F.92 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.24, D:T.29, D:R.88, D:D.89 Water bridges: D:G.55, D:N.56, D:N.56, D:K.58 PG4.5: 10 residues within 4Å: Chain E: S.24, V.51, Y.54, G.55, N.56, V.86, W.87, R.88, D.89, F.92 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:S.24, E:S.24, E:G.55, E:R.88, E:D.89 Water bridges: E:K.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Molecular Insights into the Assembly and Functional Diversification of Typhoid Toxin. Mbio (2022)

Release Date

2021-12-22

Peptides

Subtilase cytotoxin subunit B-like protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Subtilase cytotoxin subunit B-like protein

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