SMTL ID : 7e1e.1

Lamprey serum virus-like lectin-LSVL

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.263, N.280, E.282, E.294 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.282, A:E.294 CA.2: 4 residues within 4Å: Chain A: H.102, G.113, D.151, D.302 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.102, A:G.113, A:D.151, A:D.151, A:D.302 CA.3: 4 residues within 4Å: Chain B: E.263, N.280, E.282, E.294 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.282, B:E.294 CA.4: 4 residues within 4Å: Chain B: H.102, G.113, D.151, D.302 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.102, B:G.113, B:D.151, B:D.151, B:D.302 CA.5: 4 residues within 4Å: Chain C: E.263, N.280, E.282, E.294 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.282, C:E.294 CA.6: 4 residues within 4Å: Chain C: H.102, G.113, D.151, D.302 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.102, C:G.113, C:D.151, C:D.151, C:D.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qingwei, L. et al., Structure of lamprey serum virus-like lectin with high binding capacity, involved in initiation and regulation of innate immunity. To Be Published

Release Date

2022-10-19

Peptides

Serum lectin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Serum lectin