SMTL ID : 7bsb.1 (1 other biounit)

Mevo lectin- Native form-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-heptamer

Ligands

7 x GOL: GLYCEROL

GOL.1: 6 residues within 4Å: Chain A: G.17, G.18, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.18, A:G.132, A:S.133, A:S.133, A:D.134, A:D.134 GOL.2: 6 residues within 4Å: Chain A: E.12, V.13, G.14, Y.86 Chain B: K.34, E.68 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.34, B:K.34, A:G.14, A:G.14 GOL.5: 7 residues within 4Å: Chain B: G.17, G.18, R.93, G.132, S.133, D.134, D.136 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.18, B:G.132, B:S.133, B:D.134 GOL.6: 6 residues within 4Å: Chain C: G.17, G.18, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.18, C:G.132, C:S.133, C:S.133, C:D.134, C:D.134 GOL.7: 7 residues within 4Å: Chain D: G.17, G.18, R.93, G.132, S.133, D.134, D.136 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.18, D:G.132, D:S.133, D:S.133, D:D.134, D:D.134, D:D.136 GOL.9: 7 residues within 4Å: Chain E: G.17, G.18, R.93, G.132, S.133, D.134, D.136 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:G.18, E:G.132, E:S.133, E:S.133, E:D.134, E:D.134 GOL.15: 7 residues within 4Å: Chain G: G.17, G.18, R.93, G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:G.18, G:G.132, G:S.133, G:D.134, G:D.134

8 x EDO: 1,2-ETHANEDIOL

EDO.3: 4 residues within 4Å: Chain A: H.45, K.64, S.133, D.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.64, A:K.64 EDO.4: 6 residues within 4Å: Chain A: K.34, E.68 Chain E: E.12, V.13, G.14, Y.86 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain E Hydrogen bonds: A:K.34, A:K.34, E:G.14, E:G.14 EDO.8: 4 residues within 4Å: Chain D: Y.41, K.64, S.133, D.134 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.64, D:K.64, D:R.93 EDO.10: 5 residues within 4Å: Chain E: Y.41, L.43, K.64, S.133, D.134 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.64, E:K.64 EDO.11: 5 residues within 4Å: Chain C: K.34 Chain F: E.12, V.13, G.14, Y.86 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain C Hydrogen bonds: F:G.14, C:K.34 EDO.12: 4 residues within 4Å: Chain F: G.132, S.133, D.134, D.136 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.132, F:S.133, F:S.133, F:D.134, F:D.136 EDO.13: 7 residues within 4Å: Chain F: K.34, E.68, I.70 Chain G: E.12, V.13, G.14, Y.86 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain F Hydrogen bonds: G:E.12, G:G.14, F:K.34, F:K.34 EDO.14: 7 residues within 4Å: Chain B: E.12, V.13, G.14, Y.86 Chain G: K.34, E.68, I.70 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain G Hydrogen bonds: B:G.14, B:G.14, G:K.34, G:K.34

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Sivaji, N. et al., Structural and related studies on Mevo lectin from Methanococcus voltae A3. The first thorough characterisation of an archeal lectin and its interactions. Glycobiology (2020)

Release Date

2021-02-03

Peptides

lectin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
G

C
A

D
D

E
E

F
F

G
C

lectin

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