SMTL ID : 6y0l.1

Crystal structure of human CD23 lectin domain N225D, K229E, S252N, T251N, R253G, S254G mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: A.59, S.60, H.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.59, A:H.61 GOL.2: 4 residues within 4Å: Chain A: N.6, W.12, I.13, N.14 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.6, A:N.14, A:N.14 Water bridges: A:C.8 GOL.3: 3 residues within 4Å: Chain A: R.69, D.70, L.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.69, A:D.70

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.108, S.110, R.112 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.110, A:S.110 Water bridges: A:S.110 Salt bridges: A:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ilkow, V.F. et al., Reviving lost binding sites: Exploring calcium-binding site transitions between human and murine CD23. Febs Open Bio (2021)

Release Date

2021-06-16

Peptides

Low affinity immunoglobulin epsilon Fc receptor membrane-bound form: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Low affinity immunoglobulin epsilon Fc receptor membrane-bound form