SMTL ID : 6s99.1 (1 other biounit)

Dimethylated fusion protein of RSL and trimeric coiled coil in complex with cucurbit[7]uril

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-trimer

Ligands

6 x BMA: beta-D-mannopyranose

BMA.1: 9 residues within 4Å: Chain A: R.86, E.97, C.99, G.108, A.109, Y.110 Chain C: I.40, W.55, W.60 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:R.86, A:A.109, A:Y.110, C:W.55, C:W.60 Salt bridges: A:R.86 BMA.2: 9 residues within 4Å: Chain A: R.41, E.52, Y.61, G.63, A.64, I.83, I.85, W.100, W.105 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.41, A:E.52, A:Y.61, A:Y.61, A:A.64, A:F.65, A:W.100, A:W.105 Salt bridges: A:R.41 BMA.5: 10 residues within 4Å: Chain A: I.40, W.55, W.60 Chain B: W.77, R.86, E.97, C.99, G.108, A.109, Y.110 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:W.55, A:W.60, B:A.109, B:Y.110 Salt bridges: B:R.86 BMA.6: 9 residues within 4Å: Chain B: R.41, E.52, Y.61, G.63, A.64, I.83, I.85, W.100, W.105 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:R.41, B:E.52, B:D.56, B:Y.61, B:A.64, B:F.65, B:W.100, B:W.105 Salt bridges: B:R.41 BMA.9: 8 residues within 4Å: Chain B: I.40, W.55, W.60 Chain C: R.86, E.97, G.108, A.109, Y.110 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:R.86, C:A.109, C:Y.110, B:W.55, B:W.60 Salt bridges: C:R.86 BMA.10: 10 residues within 4Å: Chain C: R.41, E.52, D.56, Y.61, G.63, A.64, I.83, I.85, W.100, W.105 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.41, C:E.52, C:Y.61, C:Y.61, C:A.64, C:W.100, C:W.105 Salt bridges: C:R.41

3 x QQ7: cucurbit[7]uril

QQ7.3: 4 residues within 4Å: Chain A: K.58, G.59, W.60, Y.61 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.59 QQ7.7: 4 residues within 4Å: Chain B: K.58, G.59, W.60, Y.61 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.59 QQ7.11: 4 residues within 4Å: Chain C: K.58, G.59, W.60, Y.61 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.59

3 x SNM: N,N-dimethyl-L-serine

SNM.4: 4 residues within 4Å: Chain A: S.2, E.3, I.4, A.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.4, A:A.5 SNM.8: 4 residues within 4Å: Chain B: S.2, E.3, I.4, A.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.4, B:A.5 SNM.12: 4 residues within 4Å: Chain C: S.2, E.3, I.4, A.5 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:I.4, C:A.5

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Ramberg, K. et al., Dimethylated fusion protein of RSL and trimeric coiled coil in complex with cucurbit[7]uril. To Be Published

Release Date

2020-08-26

Peptides

4dzn-RSL,Fucose-binding lectin protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

4dzn-RSL,Fucose-binding lectin protein

Related Entries With Identical Sequence