- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- 16 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 5 residues within 4Å:- Chain A: H.192, N.193, V.226, R.252, T.422
Ligand excluded by PLIPPO4.3: 5 residues within 4Å:- Chain A: P.183, E.269, T.270, I.292, S.368
Ligand excluded by PLIPPO4.4: 3 residues within 4Å:- Chain A: R.291, E.294, N.295
Ligand excluded by PLIPPO4.5: 2 residues within 4Å:- Chain A: E.338, S.339
Ligand excluded by PLIPPO4.6: 3 residues within 4Å:- Chain A: H.561, Q.568, R.570
Ligand excluded by PLIPPO4.7: 2 residues within 4Å:- Chain A: R.570, E.571
Ligand excluded by PLIPPO4.8: 2 residues within 4Å:- Chain A: R.451, S.504
Ligand excluded by PLIPPO4.9: 3 residues within 4Å:- Chain A: D.498, L.499, N.500
Ligand excluded by PLIPPO4.10: 7 residues within 4Å:- Chain A: D.498, S.545, A.546, H.547, E.549, R.551, Y.574
Ligand excluded by PLIPPO4.11: 4 residues within 4Å:- Chain A: F.503, Y.544, H.589, F.627
Ligand excluded by PLIPPO4.12: 4 residues within 4Å:- Chain A: N.607, G.608, E.609, H.610
Ligand excluded by PLIPPO4.13: 3 residues within 4Å:- Chain A: V.582, G.583, A.599
Ligand excluded by PLIPPO4.14: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPPO4.15: 2 residues within 4Å:- Chain A: T.101, R.178
Ligand excluded by PLIPPO4.16: 2 residues within 4Å:- Chain A: S.157, H.159
Ligand excluded by PLIPPO4.21: 4 residues within 4Å:- Chain A: S.306, F.415
- Chain B: G.13, P.14
Ligand excluded by PLIP- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
UDP.17: 19 residues within 4Å:- Chain A: V.190, F.191, H.192, D.223, R.252, G.254, L.255, D.275, A.276, H.277, I.384, W.385, H.413, R.416, H.421
- Chain B: T.10, T.11
- Ligands: TAM.1, MN.18
12 PLIP interactions:11 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:H.192, A:D.223, A:D.223, A:R.252, A:A.276, B:T.11
- Water bridges: A:R.416, A:R.416
- Salt bridges: A:H.277, A:H.413, A:R.416, A:H.421
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Las Rivas, M. et al., Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3. Nat.Chem.Biol. (2020)
- Release Date
- 2019-12-25
- Peptides
- Polypeptide N-acetylgalactosaminyltransferase: A
ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)
- 16 x PO4: PHOSPHATE ION(Non-functional Binders)
- 1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NGA: 2-acetamido-2-deoxy-beta-D-galactopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Las Rivas, M. et al., Molecular basis for fibroblast growth factor 23 O-glycosylation by GalNAc-T3. Nat.Chem.Biol. (2020)
- Release Date
- 2019-12-25
- Peptides
- Polypeptide N-acetylgalactosaminyltransferase: A
ALA-THR-GLY-ALA-GLY-ALA-GLY-ALA-GLY-THR-THR-PRO-GLY-PRO: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
F