SMTL ID : 6p4r.1

Salmonella typhi PltB Homopentamer N29K Mutant with Neu5Ac-alpha-2-6-Gal-beta-1-4-GlcNAc glycans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-pentamer

Ligands

5 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.1: 5 residues within 4Å: Chain A: A.32, Y.33, Y.34, S.35, K.59 11 PLIP interactions: 11 interactions with chain A Water bridges: A:S.35, A:D.36, A:Y.33, A:Y.33, A:S.35 Hydrophobic interactions: A:A.32, A:Y.33, A:Y.34 Hydrogen bonds: A:Y.33, A:Y.33, A:S.35, A:K.59 Salt bridges: A:K.59 NAG-GAL-SIA.2: 5 residues within 4Å: Chain B: A.32, Y.33, Y.34, S.35, K.59 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.32, B:Y.33, B:Y.34 Hydrogen bonds: B:Y.33, B:Y.33, B:S.35, B:K.59 Water bridges: B:Y.33, B:Y.33, B:E.37, B:T.65 Salt bridges: B:K.59 NAG-GAL-SIA.3: 5 residues within 4Å: Chain C: A.32, Y.33, Y.34, S.35, K.59 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:A.32, C:Y.33, C:Y.34 Hydrogen bonds: C:Y.33, C:Y.33, C:S.35, C:K.59 Water bridges: C:Y.33 Salt bridges: C:K.59 NAG-GAL-SIA.4: 5 residues within 4Å: Chain D: A.32, Y.33, Y.34, S.35, K.59 9 PLIP interactions: 9 interactions with chain D Water bridges: D:K.59, D:Y.33 Hydrophobic interactions: D:A.32, D:Y.33, D:Y.34 Hydrogen bonds: D:Y.33, D:Y.33, D:S.35, D:K.59 Salt bridges: D:K.59 NAG-GAL-SIA.5: 5 residues within 4Å: Chain E: A.32, Y.33, Y.34, S.35, K.59 9 PLIP interactions: 9 interactions with chain E Water bridges: E:K.59, E:Y.33 Hydrophobic interactions: E:A.32, E:Y.33, E:Y.34 Hydrogen bonds: E:Y.33, E:Y.33, E:S.35, E:K.59 Salt bridges: E:K.59

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S. et al., Salmonella Typhoid Toxin PltB Subunit and Its Non-typhoidal Salmonella Ortholog Confer Differential Host Adaptation and Virulence. Cell Host Microbe (2020)

Release Date

2020-03-25

Peptides

Putative pertussis-like toxin subunit: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Putative pertussis-like toxin subunit

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