SMTL ID : 6m8m.1

PA14 sugar-binding domain from RTX adhesin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 10 residues within 4Å: Chain A: D.136, D.137, Q.155, G.156, D.181, Q.182, G.183, G.184, A.185 Ligands: CA.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.136, A:D.136, A:Q.182, A:A.185

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.90, G.91, Q.94, D.107, P.108, N.110 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.107, A:P.108, H2O.4, H2O.4, H2O.6 CA.3: 5 residues within 4Å: Chain A: Q.47, N.53, L.54, D.113, Q.182 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.113, A:D.113, A:Q.182, H2O.2 CA.4: 7 residues within 4Å: Chain A: D.136, D.137, D.181, Q.182, G.183, A.185 Ligands: BGC.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.136, A:D.137, A:D.181, A:G.183, A:A.185

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: F.63 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Vance, T.D.R. et al., Structure and functional analysis of a bacterial adhesin sugar-binding domain. Plos One (2019)

Release Date

2019-09-04

Peptides

Putative large adhesion protein (Lap) involved in biofilm formation: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative large adhesion protein (Lap) involved in biofilm formation