SMTL ID : 6lkr.1

Crystal structure of mouse DCAR2 CRD domain complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.1: 6 residues within 4Å: Chain A: W.28, N.29, E.32, W.69, K.102, C.121 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.69 Hydrogen bonds: A:N.29, A:N.29, A:E.32, A:E.32 Water bridges: A:N.29, A:D.70

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.95, S.97, E.101, N.117, D.118 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.95, A:D.118, A:D.118, H2O.2, H2O.4 CA.3: 5 residues within 4Å: Chain B: E.95, S.97, E.101, N.117, D.118 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.95, B:S.97, B:E.101, B:D.118, H2O.7

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Omahdi, Z. et al., Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR. J.Biol.Chem. (2020)

Release Date

2020-03-25

Peptides

C-type lectin domain family 4, member b1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C-type lectin domain family 4, member b1

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