SMTL ID : 6kzr.1 (2 other biounits)

Crystal structure of mouse DCAR2 CRD domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: E.95, S.97, E.101, N.117, D.118, I.119 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.97, A:S.97, A:N.117 Water bridges: A:S.97 GOL.2: 5 residues within 4Å: Chain A: W.28, N.29, W.69, K.102, C.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.29 Water bridges: A:D.70 GOL.5: 7 residues within 4Å: Chain B: E.95, S.97, E.101, N.117, D.118, I.119 Ligands: CA.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.95, B:S.97, B:E.101 GOL.6: 3 residues within 4Å: Chain B: F.90, W.91, W.114 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.90

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: E.95, S.97, E.101, N.117, D.118 Ligands: GOL.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.95, A:S.97, A:E.101, A:D.118, A:D.118 CA.4: 6 residues within 4Å: Chain B: E.95, S.97, E.101, N.117, D.118 Ligands: GOL.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.95, B:S.97, B:E.101, B:D.118, B:D.118

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Omahdi, Z. et al., Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR. J.Biol.Chem. (2020)

Release Date

2020-03-25

Peptides

C-type lectin domain family 4, member b1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C-type lectin domain family 4, member b1

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