SMTL ID : 6jyr.1 (1 other biounit)

GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: W.74, S.133, T.135, S.136, N.171, N.173, T.174 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.133, A:S.133, A:T.135, A:N.171, A:N.173, A:N.173, A:T.174 Water bridges: A:T.135, A:T.135 GOL.2: 8 residues within 4Å: Chain A: A.29, P.30, N.31, N.34, Q.178, W.179, F.209, D.228 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.31, A:N.34, A:R.211, A:D.228, A:D.228 Water bridges: A:Y.27, A:Q.178 GOL.3: 7 residues within 4Å: Chain B: W.74, S.133, T.135, S.136, N.171, N.173, T.174 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.133, B:T.135, B:T.135, B:N.171, B:N.173, B:N.173, B:T.174, B:T.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cong, X. et al., GII.13/21 Noroviruses Recognize Glycans with a Terminal beta-Galactose via an Unconventional Glycan Binding Site. J.Virol. (2019)

Release Date

2019-05-22

Peptides

norovirus P domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

norovirus P domain protein

Related Entries With Identical Sequence