SMTL ID : 6jyn.1 (1 other biounit)

GII.13/21 noroviruses recognize glycans with a terminal beta-galactose via an unconventional glycan binding site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x NAG- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL.1: 9 residues within 4Å: Chain A: N.74, W.75, S.134, T.136, S.137, N.172, E.173, N.174, T.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.74, A:W.75, A:S.134, A:T.136, A:N.172, A:N.174, A:N.174, A:T.175, A:T.175, A:N.174 Water bridges: A:S.137 Hydrophobic interactions: A:E.173 NAG-GAL.2: 9 residues within 4Å: Chain B: N.74, W.75, S.134, T.136, S.137, N.172, E.173, N.174, T.175 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.74, B:S.134, B:T.136, B:T.136, B:N.172, B:N.174, B:N.174, B:N.74, B:N.174 Water bridges: B:D.73, B:S.137, B:S.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cong, X. et al., GII.13/21 Noroviruses Recognize Glycans with a Terminal beta-Galactose via an Unconventional Glycan Binding Site. J.Virol. (2019)

Release Date

2019-05-22

Peptides

human norovirus P domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

human norovirus P domain protein

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