SMTL ID : 6jjj.1

Trimeric structure of Kupffer cell C-type lectin receptor Clec4f

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-hexamer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.86, E.90, W.93, N.117, E.126, D.127 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.86, A:D.86, A:E.90, A:E.126, A:D.127 CA.2: 6 residues within 4Å: Chain A: Q.114, D.116, W.118, E.126, N.136, D.137 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.116, A:E.126, A:D.137, A:D.137, H2O.1 CA.3: 6 residues within 4Å: Chain B: Q.114, D.116, W.118, E.126, N.136, D.137 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.116, B:E.126, B:E.126, B:D.137, B:D.137 CA.4: 6 residues within 4Å: Chain B: D.86, E.90, W.93, N.117, E.126, D.127 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.86, B:D.86, B:E.90, B:E.126, B:D.127 CA.5: 6 residues within 4Å: Chain C: Q.114, D.116, W.118, E.126, N.136, D.137 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.116, C:E.126, C:E.126, C:D.137, H2O.1 CA.6: 5 residues within 4Å: Chain C: D.86, E.90, N.117, E.126, D.127 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.86, C:D.86, C:E.90, C:E.126, C:D.127 CA.7: 6 residues within 4Å: Chain D: Q.114, D.116, W.118, E.126, N.136, D.137 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.116, D:D.116, D:E.126, D:E.126, D:D.137 CA.8: 5 residues within 4Å: Chain D: D.86, E.90, N.117, E.126, D.127 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.86, D:D.86, D:E.90, D:E.126, D:D.127 CA.9: 5 residues within 4Å: Chain E: Q.114, D.116, E.126, N.136, D.137 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.116, E:E.126, E:D.137, E:D.137, H2O.1 CA.10: 6 residues within 4Å: Chain E: D.86, E.90, W.93, N.117, E.126, D.127 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.86, E:D.86, E:E.90, E:E.126, E:D.127 CA.11: 6 residues within 4Å: Chain F: Q.114, D.116, W.118, E.126, N.136, D.137 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.116, F:E.126, F:D.137, F:D.137, H2O.1 CA.12: 6 residues within 4Å: Chain F: D.86, E.90, W.93, N.117, E.126, D.127 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.86, F:D.86, F:E.90, F:E.126, F:D.127

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Ouyang, Z. et al., Trimeric structure of the mouse Kupffer cell C-type lectin receptor Clec4f. Febs Lett. (2020)

Release Date

2019-08-14

Peptides

C-type lectin domain family 4 member F: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

C-type lectin domain family 4 member F