SMTL ID : 6h9z.1 (1 other biounit)

Molecular bases of histo-blood group antigen recognition by the most common human rotavirus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

2 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.1: 2 residues within 4Å: Chain A: Y.8, F.13 No protein-ligand interaction detected (PLIP) DTT.2: 6 residues within 4Å: Chain A: S.17, D.18, Y.108, G.109, G.110, L.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.17, A:G.110 Water bridges: A:S.17, A:S.17

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: N.128 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.128 Water bridges: A:R.93, A:R.93, A:N.128

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Gozalbo-Rovira, R. et al., Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens. Plos Pathog. (2019)

Release Date

2019-06-12

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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