SMTL ID : 6h2l.1

Receptor-binding domain of Proteus mirabilis Uroepithelial Cell Adhesin UcaD21-217

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Q.43, Y.44, T.135, G.136, S.137 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.136, A:S.137, A:S.137 Water bridges: A:Q.43 SO4.2: 5 residues within 4Å: Chain A: D.4, H.5, V.6 Chain B: T.161, M.186 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:N.188 Hydrogen bonds: A:V.6 Salt bridges: A:H.5 SO4.3: 5 residues within 4Å: Chain A: N.3, H.5, N.47, G.49, S.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.3 Water bridges: A:S.50, A:S.50 Salt bridges: A:H.5 SO4.4: 2 residues within 4Å: Chain A: S.82, P.111 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.82 Water bridges: A:N.113 SO4.5: 5 residues within 4Å: Chain B: Q.43, Y.44, T.135, G.136, S.137 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.43, B:G.136, B:S.137, B:S.137, B:S.137 Water bridges: B:G.48 SO4.6: 3 residues within 4Å: Chain A: M.186 Chain B: H.5, V.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.6 Water bridges: B:N.47 Salt bridges: B:H.5 SO4.7: 4 residues within 4Å: Chain B: N.3, H.5, N.47, G.49 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.3 Water bridges: B:N.3, B:S.50 Salt bridges: B:H.5 SO4.8: 2 residues within 4Å: Chain B: H.203, H.204 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.204 SO4.9: 3 residues within 4Å: Chain B: H.200, H.201, H.203 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.201, B:H.201 Salt bridges: B:H.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, W. et al., Structures of two fimbrial adhesins, AtfE and UcaD, from the uropathogen Proteus mirabilis. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-11-07

Peptides

Putative fimbrial adhesin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative fimbrial adhesin