SMTL ID : 6gxs.1 (1 other biounit)

Crystal structure of CV39L lectin from Chromobacterium violaceum at 1.8 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: A.22, I.23, T.76, T.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.23, A:T.77, A:T.77 Water bridges: A:T.77, A:T.77 SO4.2: 2 residues within 4Å: Chain A: H.159, A.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.160 Salt bridges: A:H.159 SO4.4: 4 residues within 4Å: Chain B: A.22, I.23, T.76, T.77 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.23, B:L.75, B:T.76, B:T.77 SO4.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: S.14 Chain B: N.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.14, A:S.14

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Sykorova, P. et al., Characterization of novel lectins from Burkholderia pseudomallei and Chromobacterium violaceum with seven-bladed beta-propeller fold. Int.J.Biol.Macromol. (2020)

Release Date

2019-12-04

Peptides

CV39L lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

CV39L lectin

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