SMTL ID : 6fjo.1

Adenovirus species 26 knob protein, very high resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.17 Å

Oligo State

homo-trimer

Ligands

3 x GLU: GLUTAMIC ACID(Non-covalent)

GLU.1: 5 residues within 4Å: Chain A: K.30, V.99, P.100, T.182, Q.183 5 PLIP interactions: 1 Ligand-Ligand interactions, 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: E.1 Water bridges: A:Q.183, A:Q.183, B:R.85 Salt bridges: A:K.30 GLU.4: 5 residues within 4Å: Chain B: K.30, V.99, P.100, T.182, Q.183 6 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C, 1 Ligand-Ligand interactions Hydrogen bonds: B:T.182, E.4 Water bridges: B:Q.183, B:Q.183, C:R.85 Salt bridges: B:K.30 GLU.7: 5 residues within 4Å: Chain C: K.30, V.99, P.100, T.182, Q.183 5 PLIP interactions: 1 Ligand-Ligand interactions, 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: E.7 Water bridges: C:Q.183, C:Q.183, A:R.85 Salt bridges: C:K.30

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: E.19, K.20, S.78, D.80 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.78 Water bridges: A:K.79, A:K.79 Salt bridges: A:K.20 SO4.5: 4 residues within 4Å: Chain B: E.19, K.20, S.78, D.80 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.78 Water bridges: B:K.79, B:K.79 Salt bridges: B:K.20 SO4.8: 4 residues within 4Å: Chain C: E.19, K.20, S.78, D.80 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.78 Water bridges: C:K.79, C:K.79 Salt bridges: C:K.20

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 10 residues within 4Å: Chain A: L.4, F.65, G.69, I.70, L.71, W.82, N.83, Y.84, N.96, A.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.71, A:N.83 Water bridges: A:K.79, A:W.82, A:N.96 GOL.6: 10 residues within 4Å: Chain B: L.4, F.65, G.69, I.70, L.71, W.82, N.83, Y.84, N.96, A.98 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.71, B:N.83 Water bridges: B:K.79, B:W.82, B:N.96 GOL.9: 10 residues within 4Å: Chain C: L.4, F.65, G.69, I.70, L.71, W.82, N.83, Y.84, N.96, A.98 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.71, C:N.83 Water bridges: C:K.79, C:W.82, C:N.96

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Baker, A.T. et al., Human adenovirus type 26 uses sialic acid-bearing glycans as a primary cell entry receptor. Sci Adv (2019)

Release Date

2019-02-06

Peptides

Fiber: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Fiber