- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.28 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x QQ7: cucurbit[7]uril(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 9 residues within 4Å:- Chain A: R.62, E.73, C.75, G.84, A.85, Y.86
- Chain C: I.16, W.31, W.36
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:R.62, A:A.85, A:Y.86, C:W.36
GOL.3: 7 residues within 4Å:- Chain A: R.17, E.28, A.40, F.41, I.61, W.76, W.81
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.17, A:A.40, A:F.41
GOL.4: 7 residues within 4Å:- Chain A: S.2, Q.4, A.21, N.22, N.23, G.24, D.46
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.2, A:G.24
- Water bridges: A:S.2, A:V.3, A:N.23, A:N.23
GOL.6: 9 residues within 4Å:- Chain A: I.16, W.31, W.36
- Chain B: R.62, E.73, C.75, G.84, A.85, Y.86
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.62, B:A.85, B:Y.86
GOL.7: 7 residues within 4Å:- Chain B: R.17, E.28, A.40, F.41, I.61, W.76, W.81
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.17, B:A.40, B:F.41
GOL.10: 9 residues within 4Å:- Chain B: I.16, W.31, W.36
- Chain C: R.62, E.73, C.75, G.84, A.85, Y.86
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:R.62, C:A.85, C:Y.86, B:W.36
GOL.11: 7 residues within 4Å:- Chain C: R.17, E.28, A.40, F.41, I.61, W.76, W.81
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.17, C:A.40, C:F.41
GOL.12: 6 residues within 4Å:- Chain A: T.69
- Chain C: S.1, S.2, V.3, N.22, N.23
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.22, C:N.23
- Water bridges: C:S.2, C:A.21, C:N.22, C:G.24
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Guagnini, F. et al., Cucurbit[7]uril-Dimethyllysine Recognition in a Model Protein. Angew. Chem. Int. Ed. Engl. (2018)
- Release Date
- 2018-05-30
- Peptides
- Fucose-binding lectin protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.28 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x QQ7: cucurbit[7]uril(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Guagnini, F. et al., Cucurbit[7]uril-Dimethyllysine Recognition in a Model Protein. Angew. Chem. Int. Ed. Engl. (2018)
- Release Date
- 2018-05-30
- Peptides
- Fucose-binding lectin protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C