SMTL ID : 6efi.1 (1 other biounit)

SK678 binding region (Siglec + Unique)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.11, E.13, D.38, N.39, D.111, N.115 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.11, A:D.11, A:E.13, A:D.38, A:D.38

1 x CO: COBALT (II) ION(Non-covalent)

CO.2: 1 residues within 4Å: Chain A: D.211 No protein-ligand interaction detected (PLIP)

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.4: 7 residues within 4Å: Chain A: Q.160, R.163, D.164, A.167, I.183, T.184, V.185 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.164, A:D.164, A:V.185, A:V.185 Water bridges: A:A.168 GOL.5: 4 residues within 4Å: Chain A: A.167, R.171, R.182, I.183 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.171, A:I.183, A:I.183 Water bridges: A:A.168

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: G.20, D.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.21 EDO.7: 4 residues within 4Å: Chain A: T.19, Y.22, F.32, Y.33 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.19, A:Y.22, A:Y.33 Water bridges: A:K.18, A:E.31 EDO.8: 2 residues within 4Å: Chain A: S.29, F.30 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.30, A:E.31 EDO.9: 2 residues within 4Å: Chain A: V.23, K.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.136 Water bridges: A:T.134, A:K.136 EDO.10: 3 residues within 4Å: Chain A: T.200, D.201, T.202 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.201 Water bridges: A:T.202 EDO.11: 5 residues within 4Å: Chain A: Q.16, V.17, K.18, E.35, P.85 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.16, A:Q.16, A:E.35

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Iverson, T.M., SK150 Siglec + Unique domains. To Be Published

Release Date

2020-02-19

Peptides

KxYKxGKxW signal domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KxYKxGKxW signal domain protein

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