SMTL ID : 6eff.1 (3 other biounits)

NCTC10712

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: D.6, E.8, D.33, N.34, S.35, D.106, N.110 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.6, A:D.6, A:E.8, A:D.33, A:D.106 CA.2: 7 residues within 4Å: Chain A: N.134, E.135, Y.137, D.138, P.139, Y.190, D.196 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.134, A:Y.137, A:D.196, H2O.7, H2O.8

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: D.141, P.142, S.143, A.168 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.143, A:S.143 Water bridges: A:S.143 GOL.4: 6 residues within 4Å: Chain A: V.95, V.130, K.131, S.132, E.135 Ligands: GOL.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.132, A:S.132, A:E.135 Water bridges: A:K.131, A:N.134, A:E.135 GOL.5: 6 residues within 4Å: Chain A: R.21, S.132, D.192, R.193, S.194 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.21, A:R.21 GOL.6: 4 residues within 4Å: Chain A: I.97, Y.98, T.99, R.100 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.99, A:R.100 Water bridges: A:T.99, A:T.99, A:T.99

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Iverson, T.M., NCTC10712 Siglec + Unique domains. To Be Published

Release Date

2020-02-19

Peptides

NCTC10712 Siglec: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NCTC10712 Siglec

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