SMTL ID : 5zho.1

Human group C rotavirus VP8*s recognize type A histo-blood group antigens as ligands

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x GLA- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose(Non-covalent)

GLA-FUC-A2G.1: 10 residues within 4Å: Chain A: N.46, L.47, A.48, N.88, E.89, G.90, P.143, R.144, S.145, N.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.46, A:A.48, A:G.90, A:R.144, A:S.145, A:N.146, A:N.146, A:N.46 Hydrophobic interactions: A:N.46 Water bridges: A:G.90

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Sun, X. et al., Human Group C Rotavirus VP8*s Recognize Type A Histo-Blood Group Antigens as Ligands. J. Virol. (2018)

Release Date

2018-04-11

Peptides

Outer capsid protein VP8*: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP8*

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