SMTL ID : 5yrh.1

Crystal structure of PPL3B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

hetero-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.64 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.34, A:T.34, A:T.34 Salt bridges: A:K.64 SO4.2: 1 residues within 4Å: Chain A: R.104 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.104 Salt bridges: A:R.104 SO4.3: 3 residues within 4Å: Chain A: D.13, A.14, R.128 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.14 Water bridges: A:R.128, A:R.128, A:R.128 Salt bridges: A:R.128 SO4.4: 2 residues within 4Å: Chain B: R.50, Q.51 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.51 Water bridges: B:K.41 Salt bridges: B:R.50 SO4.5: 1 residues within 4Å: Chain B: R.128 6 PLIP interactions: 6 interactions with chain B Water bridges: B:A.14, B:R.128, B:R.128, B:R.128, B:R.128 Salt bridges: B:R.128

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Nakae, S. et al., Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization. Proteins (2018)

Release Date

2018-08-29

Peptides

PPL3-a: A
PPL3-b: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PPL3-a

PPL3-b

Related Entries With Identical Sequence