- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.10, A:Y.12, A:D.19, H2O.3, H2O.3
CA.5: 4 residues within 4Å:- Chain B: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.10, B:Y.12, B:D.19, H2O.8, H2O.9
CA.8: 4 residues within 4Å:- Chain C: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.10, C:Y.12, C:D.19, H2O.14, H2O.14
CA.11: 4 residues within 4Å:- Chain D: D.10, Y.12, N.14, D.19
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.10, D:Y.12, D:D.19, H2O.19, H2O.19
- 4 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
XMM.3: 9 residues within 4Å:- Chain A: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.99
- Hydrogen bonds: A:N.14, A:L.99, A:Y.100, A:Y.100, A:Y.100, A:R.228
- Water bridges: A:G.226
XMM.6: 9 residues within 4Å:- Chain B: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.99
- Hydrogen bonds: B:N.14, B:L.99, B:Y.100, B:Y.100, B:Y.100, B:R.228
- Water bridges: B:G.226
XMM.9: 9 residues within 4Å:- Chain C: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:L.99
- Hydrogen bonds: C:N.14, C:L.99, C:Y.100, C:Y.100, C:R.228
- Water bridges: C:G.226
XMM.12: 9 residues within 4Å:- Chain D: Y.12, N.14, G.98, L.99, Y.100, A.207, D.208, G.227, R.228
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:L.99
- Hydrogen bonds: D:N.14, D:L.99, D:Y.100, D:Y.100, D:R.228
- Water bridges: D:G.226
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Nascimento, K.S. et al., Structural analysis of Dioclea lasiocarpa lectin: A C6 cells apoptosis-inducing protein. Int. J. Biochem. Cell Biol. (2017)
- Release Date
- 2017-10-04
- Peptides
- Dioclea lasiocarpa lectin (DLL): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.88 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
- Nascimento, K.S. et al., Structural analysis of Dioclea lasiocarpa lectin: A C6 cells apoptosis-inducing protein. Int. J. Biochem. Cell Biol. (2017)
- Release Date
- 2017-10-04
- Peptides
- Dioclea lasiocarpa lectin (DLL): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A