SMTL ID : 5t7u.1

Crystal structure of galectin-8N in complex with Glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: R.45, H.65, N.67, R.69, N.79, W.86, E.89 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.45, A:R.45, A:R.69, A:N.79, A:E.89, A:E.89 Water bridges: A:R.69 GOL.2: 4 residues within 4Å: Chain A: D.61, I.82, I.130, K.134 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.83, A:N.83, A:N.83

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: R.59, Y.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.59 Water bridges: A:Y.141

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: Q.47, R.59, W.86 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Bohari, M.H. et al., Structure-based rationale for differential recognition of lacto- and neolacto- series glycosphingolipids by the N-terminal domain of human galectin-8. Sci Rep (2016)

Release Date

2017-01-04

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-8

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