SMTL ID : 5mh0.1

Crystal structure of a DM9 domain containing protein from Crassostrea gigas

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.24 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: P.54, F.55, A.56, G.57, K.114, H.116, F.119, Y.123, E.130 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.56, A:K.114, A:E.130 Water bridges: A:E.38, A:E.38, A:H.116 GOL.2: 11 residues within 4Å: Chain A: D.22, I.23, L.28, K.43, H.47, L.48, H.52, E.59, F.126, A.127, G.128 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.43, A:A.127 GOL.3: 9 residues within 4Å: Chain B: P.54, F.55, A.56, G.57, K.114, H.116, F.119, Y.123, E.130 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.56, B:K.114, B:E.130 Water bridges: B:E.38, B:H.116 GOL.4: 11 residues within 4Å: Chain B: D.22, I.23, L.28, K.43, H.47, L.48, H.52, E.59, F.126, A.127, G.128 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.43, B:A.127

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, S. et al., DM9 Domain Containing Protein Functions As a Pattern Recognition Receptor with Broad Microbial Recognition Spectrum. Front Immunol (2017)

Release Date

2017-12-27

Peptides

Natterin-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Natterin-3

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