SMTL ID : 5f4j.1

Protruding domain of GII.17 norovirus Saitama/T87

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: P.6, L.8, E.232, H.236 Chain B: Q.235, Q.239 Ligands: EDO.3 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.236 Water bridges: B:Q.235 EDO.2: 5 residues within 4Å: Chain A: Q.53, N.84, L.85, N.86, L.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.85, A:N.86, A:N.86 Water bridges: A:L.100 EDO.3: 7 residues within 4Å: Chain A: Q.235, Q.239 Chain B: P.6, L.8, E.232, H.236 Ligands: EDO.1 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:Q.235 Hydrogen bonds: B:H.236 EDO.4: 5 residues within 4Å: Chain B: Q.53, N.84, L.85, N.86, L.100 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.85, B:N.86, B:N.86 Water bridges: B:L.100

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Singh, B.K. et al., Structural Evolution of the Emerging 2014-2015 GII.17 Noroviruses. J.Virol. (2015)

Release Date

2016-01-13

Peptides

Protruding domain of GII.17 norovirus capsid: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Protruding domain of GII.17 norovirus capsid