SMTL ID : 5e6t.1

Crystal structure of bovine norovirus P domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

homo-dimer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 1 residues within 4Å: Chain A: E.117 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.117 ZN.2: 4 residues within 4Å: Chain A: E.22, P.197 Chain B: R.147, H.149 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:E.22, B:H.149 ZN.3: 2 residues within 4Å: Chain A: E.158, H.159 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.159 ZN.4: 2 residues within 4Å: Chain A: H.218 Chain B: H.218 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:H.218, A:H.218 ZN.5: 2 residues within 4Å: Chain A: D.85, H.87 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.87 ZN.6: 1 residues within 4Å: Chain B: V.288 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:V.288 ZN.7: 3 residues within 4Å: Chain B: E.77, L.132, H.134 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.77, B:E.77, B:H.134, H2O.5 ZN.8: 2 residues within 4Å: Chain B: D.85, H.87 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.85, B:D.85, B:H.87

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Singh, B.K. et al., Structural analysis of bovine norovirus protruding domain. Virology (2015)

Release Date

2015-12-09

Peptides

Capsid: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid