SMTL ID : 5cb7.1 (1 other biounit)

Crystallographic structure of human rotavirus K8 VP8* in complex with A-type HBGA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x GLA- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose(Non-covalent)

GLA-FUC-A2G.1: 6 residues within 4Å: Chain A: R.38, S.124, Y.125, Y.126, L.127, T.128 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.127 Hydrogen bonds: A:R.38, A:Y.126, A:T.128, A:T.128, A:S.124, A:Y.125 Water bridges: A:R.38, A:R.110, A:R.110, A:Y.125, A:Q.115

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Yu, X. et al., Substantial Receptor-induced Structural Rearrangement of Rotavirus VP8*: Potential Implications for Cross-Species Infection. Chembiochem (2015)

Release Date

2016-06-08

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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