SMTL ID : 5bsx.1

Crystal structure of GII.10 P domain in complex with disinfectant Puregreen24

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 7 residues within 4Å: Chain A: N.119, A.131, N.132, R.133, D.162, S.164 Chain B: G.228 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.119, A:N.132, A:N.132, A:R.133, A:S.164, B:G.228 Salt bridges: A:R.133, A:R.133

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: W.158 No protein-ligand interaction detected (PLIP) EDO.3: 2 residues within 4Å: Chain A: F.222, N.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.231 Water bridges: A:R.220 EDO.4: 2 residues within 4Å: Chain A: R.64, K.170 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:F.222, A:R.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koromyslova, A.D. et al., Treatment of norovirus particles with citrate. Virology (2015)

Release Date

2015-09-09

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid protein

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