SMTL ID : 5bnn.1 (4 other biounits)

Crystal structure of human enterovirus D68 in complex with 6'SL

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x BGC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL-SIA.1: 11 residues within 4Å: Chain A: R.270, P.274, N.275, G.282 Chain C: D.91, R.95, R.104, P.231, D.232, I.233, G.234 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain C Water bridges: A:A.273, A:N.283, C:D.91 Hydrogen bonds: C:D.91, C:D.91, A:N.275, C:R.104, C:P.231, C:D.232, C:D.232 Salt bridges: C:R.104

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Sialic acid-dependent cell entry of human enterovirus D68. Nat Commun (2015)

Release Date

2015-11-18

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C
Capsid protein VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4

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