SMTL ID : 5av7.1 (1 other biounit)

Crystal structure of Calsepa lectin in complex with bisected glycan

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

1 x MMA- MAN- NAG- MAN- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]methyl alpha-D-mannopyranoside(Non-covalent)

MMA-MAN-NAG-MAN-NAG-NAG.1: 22 residues within 4Å: Chain A: G.14, G.15, N.16, G.62, D.93, N.94, G.138, Y.139, Y.140, D.142 Chain B: G.14, G.15, N.16, G.62, L.92, D.93, N.94, V.96, G.138, Y.139, Y.140, D.142 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.15, B:G.138, B:Y.139, B:Y.140, B:Y.140, B:L.92, B:D.93, B:N.94 Hydrophobic interactions: B:Y.139

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins. Sci Rep (2016)

Release Date

2016-04-27

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lectin

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