- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.12: 4 residues within 4Å:- Chain A: P.136, A.137, H.166, K.218
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.137, A:H.166
EDO.13: 4 residues within 4Å:- Chain A: P.370, V.400, P.401, S.402
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.402, A:S.402
- Water bridges: A:S.402, A:K.564
EDO.14: 3 residues within 4Å:- Chain A: Y.367, T.368, S.373
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.368, A:S.373
- Water bridges: A:K.363, A:P.366, A:G.372
EDO.15: 6 residues within 4Å:- Chain A: P.251, I.252, I.253, A.266, W.282
- Chain B: P.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:P.251, A:I.253
- Water bridges: A:A.266
EDO.16: 2 residues within 4Å:- Chain A: A.299, P.300
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.240
- Water bridges: A:R.240
EDO.17: 5 residues within 4Å:- Chain A: S.542, R.543, T.544, A.545, K.546
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.546
EDO.18: 5 residues within 4Å:- Chain A: Y.324, D.325, M.326, S.413, R.414
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.325, A:M.326, A:S.413, A:S.413, A:R.414
EDO.19: 4 residues within 4Å:- Chain A: Q.452, S.542, L.559, S.560
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.455, A:L.559
EDO.20: 1 residues within 4Å:- Chain A: R.201
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.201, A:R.201, A:W.331
- Water bridges: A:H.145, A:N.146
EDO.21: 3 residues within 4Å:- Chain A: A.117, I.118, P.119
No protein-ligand interaction detected (PLIP)EDO.22: 4 residues within 4Å:- Chain A: D.244, T.246, R.247, K.302
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.246, A:T.246, A:R.247, A:K.302, A:K.302
EDO.23: 2 residues within 4Å:- Chain A: L.196, R.210
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.210
- Water bridges: A:R.210
EDO.24: 4 residues within 4Å:- Chain A: E.526, G.527, S.529, K.564
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.529, A:S.529, A:K.564
EDO.26: 2 residues within 4Å:- Chain A: R.438, M.493
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.438, A:R.438
- Water bridges: A:M.493
- 1 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Post Translational Modification)
A2G.25: 12 residues within 4Å:- Chain A: D.458, L.460, G.461, Y.471, H.474, G.478, N.479, Q.480
- Chain B: S.11, C.13, S.14, A.15
9 PLIP interactions:2 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:S.11, B:S.11, A:D.458, A:L.460, A:H.474, A:N.479, A:N.479, A:Q.480
- Water bridges: A:Y.471
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lira-Navarrete, E. et al., Dynamic Interplay between Catalytic and Lectin Domains of Galnac-Transferases Modulates Protein O-Glycosylation. Nat.Commun. (2015)
- Release Date
- 2015-03-11
- Peptides
- POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2: A
MUCIN: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
P
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lira-Navarrete, E. et al., Dynamic Interplay between Catalytic and Lectin Domains of Galnac-Transferases Modulates Protein O-Glycosylation. Nat.Commun. (2015)
- Release Date
- 2015-03-11
- Peptides
- POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2: A
MUCIN: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
P