SMTL ID : 4z4w.1

Crystal structure of GII.10 P domain in complex with 4.7mM fucose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: R.76, G.77, V.138, S.156, T.157, W.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.156 Water bridges: A:R.76 EDO.2: 4 residues within 4Å: Chain A: G.228, Y.229 Chain B: A.131, N.132 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.132, A:G.228, A:G.228 Water bridges: B:R.133 EDO.4: 5 residues within 4Å: Chain B: G.77, V.138, S.156, T.157, W.158 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.156 Water bridges: B:Q.110

1 x FUL: beta-L-fucopyranose(Non-covalent)

FUL.3: 7 residues within 4Å: Chain A: A.131, N.132, R.133, D.162 Chain B: G.227, G.228, Y.229 10 PLIP interactions: 2 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:Y.229, A:A.131 Hydrogen bonds: B:G.228, A:N.132, A:R.133, A:R.133, A:D.162 Water bridges: A:N.119, A:H.135, A:D.162

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Koromyslova, A.D. et al., The sweet quartet: Binding of fucose to the norovirus capsid. Virology (2015)

Release Date

2015-05-27

Peptides

Capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Capsid protein

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