- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-trimer
- Ligands
- 2 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)
- 9 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
CA.3: 6 residues within 4Å:- Chain A: D.92, E.96, N.120, E.125, D.126
- Ligands: CA.5
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.92, A:E.96, A:E.125, A:D.126, H2O.1
CA.4: 6 residues within 4Å:- Chain A: E.117, N.119, E.125, N.137, D.138
- Ligands: MAN-MAN.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.117, A:E.125, A:D.138, A:D.138
CA.5: 7 residues within 4Å:- Chain A: E.96, N.120, D.123, E.125, D.126
- Ligands: CA.3, GOL.6
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.126, A:D.126, H2O.1
CA.7: 6 residues within 4Å:- Chain B: D.92, E.96, N.120, E.125, D.126
- Ligands: CA.9
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.92, B:E.96, B:E.125, B:D.126, H2O.1
CA.8: 6 residues within 4Å:- Chain B: E.117, N.119, E.125, N.137, D.138
- Ligands: MAN-MAN.2
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.117, B:E.125, B:D.138, B:D.138
CA.9: 6 residues within 4Å:- Chain B: E.96, N.120, D.123, D.126
- Ligands: CA.7, GOL.10
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:E.96, B:D.123, B:D.126
CA.12: 6 residues within 4Å:- Chain C: D.92, E.96, N.120, E.125, D.126
- Ligands: CA.14
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.92, C:D.92, C:E.96, C:E.96, C:E.125
CA.13: 6 residues within 4Å:- Chain C: E.117, N.119, E.125, N.137, D.138
- Ligands: GOL.11
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.117, C:E.125, C:D.138, C:D.138
CA.14: 6 residues within 4Å:- Chain C: E.96, N.120, D.123, D.126
- Ligands: CA.12, GOL.15
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:E.96, C:D.126
- 4 x GOL: GLYCEROL(Non-functional Binders)(Non-covalent)
GOL.6: 6 residues within 4Å:- Chain A: D.92, L.93, E.94, E.96, D.126
- Ligands: CA.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.92, A:E.94, A:E.96
GOL.10: 5 residues within 4Å:- Chain B: D.92, L.93, E.96, D.126
- Ligands: CA.9
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.93
GOL.11: 7 residues within 4Å:- Chain C: E.117, N.119, E.125, N.137, D.138, V.139
- Ligands: CA.13
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.119, C:N.137, C:N.137
GOL.15: 6 residues within 4Å:- Chain C: D.92, L.93, E.94, E.96, D.126
- Ligands: CA.14
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:E.96, C:E.96, C:E.96
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Girija, U.V. et al., Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome. Bmc Biol. (2015)
- Release Date
- 2015-04-08
- Peptides
- Collectin-11: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.87 Å
- Oligo State
- homo-trimer
- Ligands
- 2 x MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose(Non-covalent)
- 9 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Girija, U.V. et al., Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome. Bmc Biol. (2015)
- Release Date
- 2015-04-08
- Peptides
- Collectin-11: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C