SMTL ID : 4ygd.1 (3 other biounits)

Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-1-1-mer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.129, F.131, N.133, D.158 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.129, A:D.129, A:F.131, A:D.158, H2O.1 CA.2: 5 residues within 4Å: Chain A: D.132, D.134, N.138, N.139, D.158 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.132, A:D.134, A:D.158 CA.5: 5 residues within 4Å: Chain B: D.39, D.41, N.43, L.45, E.50 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.39, B:D.41, B:L.45, B:E.50, H2O.3 CA.6: 5 residues within 4Å: Chain B: D.87, N.89, D.91, Y.93, E.98 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.87, B:D.91, B:Y.93, B:E.98, H2O.3

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: G.229, L.230 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: K.30, G.31, P.32, H.33 Chain B: T.53 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Satoh, T. et al., Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport. Acta Crystallogr.,Sect.F (2020)

Release Date

2016-04-06

Peptides

Protein ERGIC-53: A
Multiple coagulation factor deficiency protein 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein ERGIC-53

Multiple coagulation factor deficiency protein 2

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