SMTL ID : 4x7d.1

Crystal structure of 2012 NSW GII.4 P domain in complex with Nano-85

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-oligomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Q.236, Q.240 Chain B: E.233, Q.236, Y.237 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:Q.236, A:Q.240 Hydrogen bonds: B:Q.236 EDO.2: 4 residues within 4Å: Chain A: V.8 Chain B: Y.239, Q.240, A.242 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.8 Water bridges: B:Y.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koromyslova, A.D. et al., Nanobody binding to a conserved epitope promotes norovirus particle disassembly. J.Virol. (2015)

Release Date

2014-12-31

Peptides

VP1: AB
Nano-85 Nanobody: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

VP1

Nano-85 Nanobody

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