SMTL ID : 4x05.1 (1 other biounit)

Crystal structure of P domain from norovirus strain Farmington Hills 2004 in complex with HBGA type B (triglycan)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

2 x GLA- FUC- GLA: alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose(Non-covalent)

GLA-FUC-GLA.1: 8 residues within 4Å: Chain A: S.120, T.121, R.122, H.124, D.151 Chain B: S.219, G.220, Y.221 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.122, A:R.122, A:D.151, B:G.220 Water bridges: A:H.124, A:D.151, A:E.153, A:N.150 Hydrophobic interactions: B:Y.221 GLA-FUC-GLA.2: 8 residues within 4Å: Chain A: S.219, G.220, Y.221 Chain B: S.120, T.121, R.122, H.124, D.151 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.122, B:R.122, B:D.151, A:G.220 Water bridges: B:H.124, B:D.151, B:D.151, B:E.153, A:K.125, B:N.150 Hydrophobic interactions: A:Y.221

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Singh, B.K. et al., Human noroviruses' fondness for histo-blood group antigens. J.Virol. (2015)

Release Date

2014-12-17

Peptides

Major capsid protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Major capsid protein

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