SMTL ID : 4uri.1 (1 other biounit)

Crystal structure of chitinase-like agglutinin RobpsCRA from Robinia pseudoacacia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 9 residues within 4Å: Chain A: Y.6, F.30, G.73, D.114, E.116, A.155, M.183, Y.185, W.317 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.6, A:F.30, A:A.155, A:W.317 Hydrogen bonds: A:E.116, A:Y.185, A:Y.185 MPD.2: 8 residues within 4Å: Chain A: F.204, Y.205, G.208, I.209, F.210, S.211, D.213, E.214 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.205, A:S.211, A:D.213 MPD.3: 3 residues within 4Å: Chain A: F.204, P.206, T.278 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.204 Hydrogen bonds: A:T.278

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: R.241, T.255, Q.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.241, A:Q.256 NA.5: 2 residues within 4Å: Chain A: N.175, K.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.177, A:K.228 NA.6: 3 residues within 4Å: Chain A: L.102, R.105, N.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.105, A:R.105, A:N.106

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: Q.198, Y.205 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Sulzenbacher, G. et al., Structural Basis for Carbohydrate Binding Properties of a Plant Chitinase-Like Agglutinin with Conserved Catalytic Machinery. J.Struct.Biol. (2015)

Release Date

2015-03-11

Peptides

CHITINASE-RELATED AGGLUTININ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHITINASE-RELATED AGGLUTININ

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