SMTL ID : 4tkc.1

Japanese Marasmius oreades lectin complexed with mannose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

homo-dimer

Ligands

2 x BMA: beta-D-mannopyranose(Non-covalent)

BMA.1: 7 residues within 4Å: Chain A: Q.64, D.66, N.68, Y.72, A.78, H.81, N.85 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.64, A:D.66, A:N.68, A:Y.72, A:H.81, A:N.85, A:N.85 BMA.4: 7 residues within 4Å: Chain B: Q.64, D.66, N.68, Y.72, A.78, H.81, N.85 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.64, B:D.66, B:N.68, B:Y.72, B:Y.72, B:H.81, B:N.85, B:N.85 Water bridges: B:H.81

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: K.56, N.57, D.73 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.57 Water bridges: A:D.73 GOL.5: 3 residues within 4Å: Chain B: K.56, N.57, D.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.57, B:D.73 Water bridges: B:D.73

2 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.3: 7 residues within 4Å: Chain A: Q.96, D.98, N.100, Y.104, A.110, H.113, A.117 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.96, A:D.98, A:N.100, A:Y.104, A:Y.104, A:H.113 MAN.6: 7 residues within 4Å: Chain B: Q.96, D.98, N.100, Y.104, A.110, H.113, A.117 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.96, B:D.98, B:N.100, B:Y.104, B:H.113

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Noma, Y. et al., Structure of Japanese Marasmius oreades lectin complexed with mannose. To Be Published

Release Date

2015-06-03

Peptides

Mannose recognizing lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mannose recognizing lectin

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