SMTL ID : 4piu.1

CRYSTAL STRUCTURE OF BANANA LECTIN H84T MUTANT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: E.71, T.96, K.98, Y.101 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.101, A:Y.101

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.34, D.35, V.36, D.38, G.59, G.60, Y.83, F.131 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.34, A:D.35, A:V.36, A:V.36, A:G.60 Water bridges: A:D.35 GOL.3: 7 residues within 4Å: Chain A: G.14, G.15, A.86, G.129, K.130, F.131, D.133 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.15, A:G.129, A:K.130, A:F.131, A:F.131 Water bridges: A:G.14 GOL.4: 8 residues within 4Å: Chain A: Y.24, R.25, I.26, L.67, Y.72, L.73, K.120, I.121 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.24, A:I.26, A:I.26, A:L.73, A:L.73, A:I.121 GOL.5: 4 residues within 4Å: Chain A: H.63, E.64, Y.101, F.104 1 PLIP interactions: 1 interactions with chain A Water bridges: A:P.62 GOL.6: 4 residues within 4Å: Chain A: V.80, V.87, G.109, T.110 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.80, A:T.110 Water bridges: A:N.82, A:N.82 GOL.7: 5 residues within 4Å: Chain A: M.20, Y.46, E.51, R.53, Y.55 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.20, A:R.53, A:Y.55 GOL.8: 7 residues within 4Å: Chain A: A.77, G.78, E.79, G.93, Y.101, G.102, P.103 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.79 Water bridges: A:G.78, A:G.78 GOL.9: 8 residues within 4Å: Chain B: G.34, D.35, V.36, D.38, G.59, G.60, Y.83, F.131 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.34, B:D.35, B:V.36, B:V.36, B:G.60 GOL.10: 6 residues within 4Å: Chain B: G.14, G.15, G.129, K.130, F.131, D.133 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.15, B:G.129, B:K.130, B:F.131, B:F.131 Water bridges: B:V.87, B:D.133 GOL.11: 7 residues within 4Å: Chain B: S.33, G.34, T.61, H.63, F.104, G.105, N.106 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.33, B:T.61, B:T.61, B:G.105 Water bridges: B:N.106 GOL.12: 8 residues within 4Å: Chain B: G.75, M.76, A.77, G.93, F.94, S.95, Y.101, P.103 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.75 Water bridges: B:M.76 GOL.13: 8 residues within 4Å: Chain B: Y.24, R.25, I.26, L.67, Y.72, L.73, K.120, I.121 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.26, B:L.73, B:L.73

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Swanson, M.D. et al., Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity. Cell (2015)

Release Date

2015-11-04

Peptides

Ripening-associated protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ripening-associated protein