SMTL ID : 4pdt.1

Japanese Marasmius oreades lectin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: W.112, H.113, N.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.113, A:N.115 Water bridges: A:N.115 Salt bridges: A:H.113 SO4.2: 1 residues within 4Å: Ligands: SO4.6 No protein-ligand interaction detected (PLIP) SO4.3: 4 residues within 4Å: Chain A: N.14, K.62, Q.64 Ligands: SO4.5 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Water bridges: A:K.62, A:K.62, A:Q.64, A:T.65, A:T.65, A:T.65, A:T.65, B:P.6 Salt bridges: A:K.62 SO4.4: 3 residues within 4Å: Chain B: W.112, H.113, N.115 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.113, B:N.115 Water bridges: B:N.115 Salt bridges: B:H.113 SO4.5: 1 residues within 4Å: Ligands: SO4.3 No protein-ligand interaction detected (PLIP) SO4.6: 4 residues within 4Å: Chain B: N.14, K.62, Q.64 Ligands: SO4.2 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Water bridges: B:K.62, B:K.62, B:Q.64, B:T.65, B:T.65, B:T.65, B:T.65, B:T.65, A:P.6 Salt bridges: B:K.62

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Noma, Y. et al., The structure of Japanese Marasmius oreades lectin at 1.40 Angstroms resolution. To Be Published

Release Date

2015-04-29

Peptides

Mannose recognizing lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Mannose recognizing lectin

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