SMTL ID : 4p1v.1 (1 other biounit)

Structure of the P domain from a GI.7 Norovirus variant in complex with H-type 2 HBGA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

2 x NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-GAL-FUC.1: 10 residues within 4Å: Chain A: D.107, H.109, R.126, D.128, W.160, S.162, P.163, T.165, S.166 Chain B: D.122 11 PLIP interactions: 4 interactions with chain B, 7 interactions with chain A Water bridges: B:D.122, B:D.122, B:D.122, B:D.122, A:D.147, A:K.130, A:S.166 Hydrogen bonds: A:H.109, A:R.126, A:R.126, A:D.107, A:H.109, A:S.162, A:S.162, A:T.165 NAG-GAL-FUC.2: 10 residues within 4Å: Chain A: G.121 Chain B: D.107, H.109, R.126, D.128, W.160, S.162, P.163, T.165, S.166 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:H.109, B:R.126, B:R.126, B:D.128, B:D.107, B:H.109, B:S.162, B:S.162, B:T.165 Water bridges: B:D.107, B:D.128, B:T.145, A:D.122, A:D.122

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Shanker, S. et al., Structural analysis of determinants of histo-blood group antigen binding specificity in genogroup I noroviruses. J.Virol. (2014)

Release Date

2014-04-02

Peptides

P domain of VPI: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

P domain of VPI

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