SMTL ID : 4o5j.1

Crystal structure of SabA from Helicobacter pylori

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: N.235, Q.239, Y.240 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.235 Water bridges: A:Q.315 EDO.2: 2 residues within 4Å: Chain A: K.48, Y.385 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.48, A:K.48

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: W.98, G.103, K.153, A.156, E.157, Q.160 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.153, A:A.156, A:Q.160 Water bridges: A:K.153, A:K.153

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Pang, S.S. et al., The three-dimensional structure of the extracellular adhesion domain of the sialic acid-binding adhesin SabA from Helicobacter pylori. J.Biol.Chem. (2013)

Release Date

2014-01-01

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein